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Unveiling microbial diversity: harnessing long-read sequencing technology
Long-read sequencing has recently transformed metagenomics, enhancing strain-level
pathogen characterization, enabling accurate and complete metagenome-assembled …
pathogen characterization, enabling accurate and complete metagenome-assembled …
Effect of dietary components on the gut microbiota of aquatic animals. A never‐ending story?
It is well known that healthy gut microbiota is essential to promote host health and well‐
being. The intestinal microbiota of endothermic animals as well as fish are classified as …
being. The intestinal microbiota of endothermic animals as well as fish are classified as …
[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …
studies of naturally occurring microbial communities. Comprehensive investigations of …
Next‐generation sequencing technologies for environmental DNA research
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene …
biological science. The analysis of environmental DNA through the use of specific gene …
The human microbiome: our second genome
The human genome has been referred to as the blueprint of human biology. In this review
we consider an essential but largely ignored overlay to that blueprint, the human …
we consider an essential but largely ignored overlay to that blueprint, the human …
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
Using non-conventional markers, DNA metabarcoding allows biodiversity assessment from
complex substrates. In this article, we present ecoPrimers, a software for identifying new …
complex substrates. In this article, we present ecoPrimers, a software for identifying new …
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
Background Random community genomes (metagenomes) are now commonly used to
study microbes in different environments. Over the past few years, the major challenge …
study microbes in different environments. Over the past few years, the major challenge …
Next-generation DNA sequencing methods
ER Mardis - Annu. Rev. Genomics Hum. Genet., 2008 - annualreviews.org
Recent scientific discoveries that resulted from the application of next-generation DNA
sequencing technologies highlight the striking impact of these massively parallel platforms …
sequencing technologies highlight the striking impact of these massively parallel platforms …
Metagenomics and future perspectives in virus discovery
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …
the spread of viral agents requires both adequate preparedness and quick response …
Multivariate analyses in microbial ecology
A Ramette - FEMS microbiology ecology, 2007 - academic.oup.com
Environmental microbiology is undergoing a dramatic revolution due to the increasing
accumulation of biological information and contextual environmental parameters. This will …
accumulation of biological information and contextual environmental parameters. This will …