The transformational role of GPU computing and deep learning in drug discovery

M Pandey, M Fernandez, F Gentile, O Isayev… - Nature Machine …, 2022 - nature.com
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …

Physics-inspired structural representations for molecules and materials

F Musil, A Grisafi, AP Bartók, C Ortner… - Chemical …, 2021 - ACS Publications
The first step in the construction of a regression model or a data-driven analysis, aiming to
predict or elucidate the relationship between the atomic-scale structure of matter and its …

MACE: Higher order equivariant message passing neural networks for fast and accurate force fields

I Batatia, DP Kovacs, G Simm… - Advances in Neural …, 2022 - proceedings.neurips.cc
Creating fast and accurate force fields is a long-standing challenge in computational
chemistry and materials science. Recently, Equivariant Message Passing Neural Networks …

DeePMD-kit v2: A software package for deep potential models

J Zeng, D Zhang, D Lu, P Mo, Z Li, Y Chen… - The Journal of …, 2023 - pubs.aip.org
DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics
simulations using machine learning potentials known as Deep Potential (DP) models. This …

Machine learning interatomic potentials and long-range physics

DM Anstine, O Isayev - The Journal of Physical Chemistry A, 2023 - ACS Publications
Advances in machine learned interatomic potentials (MLIPs), such as those using neural
networks, have resulted in short-range models that can infer interaction energies with near …

The design space of E (3)-equivariant atom-centred interatomic potentials

I Batatia, S Batzner, DP Kovács, A Musaelian… - Nature Machine …, 2025 - nature.com
Molecular dynamics simulation is an important tool in computational materials science and
chemistry, and in the past decade it has been revolutionized by machine learning. This rapid …

Extending machine learning beyond interatomic potentials for predicting molecular properties

N Fedik, R Zubatyuk, M Kulichenko, N Lubbers… - Nature Reviews …, 2022 - nature.com
Abstract Machine learning (ML) is becoming a method of choice for modelling complex
chemical processes and materials. ML provides a surrogate model trained on a reference …

Choosing the right molecular machine learning potential

M Pinheiro, F Ge, N Ferré, PO Dral, M Barbatti - Chemical Science, 2021 - pubs.rsc.org
Quantum-chemistry simulations based on potential energy surfaces of molecules provide
invaluable insight into the physicochemical processes at the atomistic level and yield such …

TorchMD: A deep learning framework for molecular simulations

S Doerr, M Majewski, A Pérez, A Kramer… - Journal of chemical …, 2021 - ACS Publications
Molecular dynamics simulations provide a mechanistic description of molecules by relying
on empirical potentials. The quality and transferability of such potentials can be improved …

Computational approaches for organic semiconductors: from chemical and physical understanding to predicting new materials

V Bhat, CP Callaway, C Risko - Chemical Reviews, 2023 - ACS Publications
While a complete understanding of organic semiconductor (OSC) design principles remains
elusive, computational methods─ ranging from techniques based in classical and quantum …