Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool

I Letunic, P Bork - Nucleic acids research, 2024 - academic.oup.com
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the
management, display, annotation and manipulation of phylogenetic and other trees. It is …

Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the 'retro'approach to protein engineering

Y Gumulya, EMJ Gillam - Biochemical Journal, 2017 - portlandpress.com
A central goal in molecular evolution is to understand the ways in which genes and proteins
evolve in response to changing environments. In the absence of intact DNA from fossils …

Common methods for phylogenetic tree construction and their implementation in R

Y Zou, Z Zhang, Y Zeng, H Hu, Y Hao, S Huang, B Li - Bioengineering, 2024 - mdpi.com
A phylogenetic tree can reflect the evolutionary relationships between species or gene
families, and they play a critical role in modern biological research. In this review, we …

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

I Letunic, P Bork - Nucleic acids research, 2021 - academic.oup.com
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the display,
manipulation and annotation of phylogenetic and other trees. It is freely available and open …

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

I Letunic, P Bork - Nucleic acids research, 2019 - academic.oup.com
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the display,
manipulation and annotation of phylogenetic and other trees. It is freely available and open …

Evolution of increased complexity and specificity at the dawn of form I Rubiscos

L Schulz, Z Guo, J Zarzycki, W Steinchen, JM Schuller… - Science, 2022 - science.org
The evolution of ribulose-1, 5-bisphosphate carboxylase/oxygenases (Rubiscos) that
discriminate strongly between their substrate carbon dioxide and the undesired side …

[HTML][HTML] The water lily genome and the early evolution of flowering plants

L Zhang, F Chen, X Zhang, Z Li, Y Zhao, R Lohaus… - Nature, 2020 - nature.com
Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and
Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant …

[KNIHA][B] Data integration, manipulation and visualization of phylogenetic trees

G Yu - 2022 - taylorfrancis.com
Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and
demonstrates data integration, manipulation and visualization of phylogenetic trees using a …

Analysis of the B cell receptor repertoire in six immune-mediated diseases

RJM Bashford-Rogers, L Bergamaschi, EF McKinney… - Nature, 2019 - nature.com
B cells are important in the pathogenesis of many, and perhaps all, immune-mediated
diseases. Each B cell expresses a single B cell receptor (BCR), and the diverse range of …

Seaview version 5: a multiplatform software for multiple sequence alignment, molecular phylogenetic analyses, and tree reconciliation

M Gouy, E Tannier, N Comte, DP Parsons - Multiple sequence alignment …, 2021 - Springer
We present Seaview version 5, a multiplatform program to perform multiple alignment and
phylogenetic tree building from molecular sequence data. Seaview provides network access …