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New approaches for inferring phylogenies in the presence of paralogs
The availability of whole genome sequences was expected to supply essentially unlimited
data for phylogenetics. However, strict reliance on single-copy genes for this purpose has …
data for phylogenetics. However, strict reliance on single-copy genes for this purpose has …
The little skate genome and the evolutionary emergence of wing-like fins
F Marlétaz, E de la Calle-Mustienes, RD Acemel… - Nature, 2023 - nature.com
Skates are cartilaginous fish whose body plan features enlarged wing-like pectoral fins,
enabling them to thrive in benthic environments,. However, the molecular underpinnings of …
enabling them to thrive in benthic environments,. However, the molecular underpinnings of …
The hagfish genome and the evolution of vertebrates
F Marlétaz, N Timoshevskaya, VA Timoshevskiy… - Nature, 2024 - nature.com
As the only surviving lineages of jawless fishes, hagfishes and lampreys provide a crucial
window into early vertebrate evolution,–. Here we investigate the complex history, timing …
window into early vertebrate evolution,–. Here we investigate the complex history, timing …
The monoaminergic system is a bilaterian innovation
M Goulty, G Botton-Amiot, E Rosato… - Nature …, 2023 - nature.com
Monoamines like serotonin, dopamine, and adrenaline/noradrenaline (epinephrine/
norepinephrine) act as neuromodulators in the nervous system. They play a role in complex …
norepinephrine) act as neuromodulators in the nervous system. They play a role in complex …
Reconciling gene trees with species trees
In the last decade, we witnessed the ascent of reconciliations as an important tool to model
and study the evolution of gene families. Reconciliations model discordance between gene …
and study the evolution of gene families. Reconciliations model discordance between gene …
Key processes required for the different stages of fungal carnivory by a nematode-trap** fungus
HC Lin, GVD de Ulzurrun, SA Chen, CT Yang… - PLoS …, 2023 - journals.plos.org
Nutritional deprivation triggers a switch from a saprotrophic to predatory lifestyle in soil-
dwelling nematode-trap** fungi (NTF). In particular, the NTF Arthrobotrys oligospora …
dwelling nematode-trap** fungi (NTF). In particular, the NTF Arthrobotrys oligospora …
Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes
F Marlétaz, A Couloux, J Poulain, K Labadie… - Cell Genomics, 2023 - cell.com
Sea urchins are emblematic models in developmental biology and display several
characteristics that set them apart from other deuterostomes. To uncover the genomic cues …
characteristics that set them apart from other deuterostomes. To uncover the genomic cues …
Phylogenetic analyses of seven protein families refine the evolution of small RNA pathways in green plants
Several protein families participate in the biogenesis and function of small RNAs (sRNAs) in
plants. Those with primary roles include Dicer-like (DCL), RNA-dependent RNA polymerase …
plants. Those with primary roles include Dicer-like (DCL), RNA-dependent RNA polymerase …
Detecting macroevolutionary genotype–phenotype associations using error-corrected rates of protein convergence
On macroevolutionary timescales, extensive mutations and phylogenetic uncertainty mask
the signals of genotype–phenotype associations underlying convergent evolution. To …
the signals of genotype–phenotype associations underlying convergent evolution. To …
Order of amino acid recruitment into the genetic code resolved by Last Universal Common Ancestor's protein domains
The current “consensus” order in which amino acids were added to the genetic code is
based on potentially biased criteria, such as the absence of sulfur-containing amino acids …
based on potentially biased criteria, such as the absence of sulfur-containing amino acids …