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Computer-aided understanding and engineering of enzymatic selectivity
L Wu, L Qin, Y Nie, Y Xu, YL Zhao - Biotechnology Advances, 2022 - Elsevier
Abstract Enzymes offering chemo-, regio-, and stereoselectivity enable the asymmetric
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …
Mimicking Enzymes: The quest for powerful catalysts from simple molecules to nanozymes
Y Lyu, P Scrimin - ACS Catalysis, 2021 - ACS Publications
Enzymes are highly evolved catalysts that perform their tasks with high efficiency. 1 Hence,
they may constitute a very attractive reference in the development of a synthetic catalyst. The …
they may constitute a very attractive reference in the development of a synthetic catalyst. The …
ADMETboost: a web server for accurate ADMET prediction
The absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties are
important in drug discovery as they define efficacy and safety. In this work, we applied an …
important in drug discovery as they define efficacy and safety. In this work, we applied an …
UMAP as a dimensionality reduction tool for molecular dynamics simulations of biomacromolecules: a comparison study
Proteins are the molecular machines of life. The multitude of possible conformations that
proteins can adopt determines their free-energy landscapes. However, the inherently high …
proteins can adopt determines their free-energy landscapes. However, the inherently high …
[HTML][HTML] Trends in in-silico guided engineering of efficient polyethylene terephthalate (PET) hydrolyzing enzymes to enable bio-recycling and upcycling of PET
Polyethylene terephthalate (PET) is the largest produced polyester globally, and less than
30% of all the PET produced globally (∼ 6 billion pounds annually) is currently recycled into …
30% of all the PET produced globally (∼ 6 billion pounds annually) is currently recycled into …
A novel neural network-based alloy design strategy: Gated recurrent unit machine learning modeling integrated with orthogonal experiment design and data …
J Yin, Q Lei, X Li, X Zhang, X Meng, Y Jiang, L Tian… - Acta Materialia, 2023 - Elsevier
Abstract Machine learning-aided alloy design has recently attracted broad interest among
the materials science community. However, the prediction accuracy of general machine …
the materials science community. However, the prediction accuracy of general machine …
Enhancing conformational sampling for intrinsically disordered and ordered proteins by Variational autoencoder
Intrinsically disordered proteins (IDPs) account for more than 50% of the human proteome
and are closely associated with tumors, cardiovascular diseases, and neurodegeneration …
and are closely associated with tumors, cardiovascular diseases, and neurodegeneration …
Explore protein conformational space with variational autoencoder
Molecular dynamics (MD) simulations have been actively used in the study of protein
structure and function. However, extensive sampling in the protein conformational space …
structure and function. However, extensive sampling in the protein conformational space …
[HTML][HTML] Understanding the effectiveness of enzyme pre-reaction state by a quantum-based machine learning model
Prediction of enzymatic stereochemistry is a significant challenge in computational chemistry
because of targeting very small energy gaps in highly complicated macromolecular systems …
because of targeting very small energy gaps in highly complicated macromolecular systems …
Machine learning models predict calculation outcomes with the transferability necessary for computational catalysis
Virtual high-throughput screening (VHTS) and machine learning (ML) have greatly
accelerated the design of single-site transition-metal catalysts. VHTS of catalysts, however …
accelerated the design of single-site transition-metal catalysts. VHTS of catalysts, however …