[PDF][PDF] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

D Liebschner, PV Afonine, ML Baker… - … Section D: Structural …, 2019 - journals.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods
to determine three-dimensional macromolecular structures, which are required to …

Membranes under the magnetic lens: a dive into the diverse world of membrane protein structures using Cryo-EM

SJ Piper, RM Johnson, D Wootten, PM Sexton - Chemical reviews, 2022 - ACS Publications
Membrane proteins are highly diverse in both structure and function and can, therefore,
present different challenges for structure determination. They are biologically important for …

[HTML][HTML] Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination

L Krause, R Herbst-Irmer, GM Sheldrick… - Journal of applied …, 2015 - scripts.iucr.org
The quality of diffraction data obtained using silver and molybdenum microsources has been
compared for six model compounds with a wide range of absorption factors. The …

Structure of a modular polyketide synthase

S Dutta, JR Whicher, DA Hansen, WA Hale… - Nature, 2014 - nature.com
Polyketide natural products constitute a broad class of compounds with diverse structural
features and biological activities. Their biosynthetic machinery, represented by type I …

Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement

F DiMaio, Y Song, X Li, MJ Brunner, C Xu… - Nature …, 2015 - nature.com
We describe a general approach for refining protein structure models on the basis of cryo-
electron microscopy maps with near-atomic resolution. The method integrates Monte Carlo …

Outcome of the first electron microscopy validation task force meeting

R Henderson, A Sali, ML Baker, B Carragher… - Structure, 2012 - cell.com
This Meeting Review describes the proceedings and conclusions from the inaugural
meeting of the Electron Microscopy Validation Task Force organized by the Unified Data …

One number does not fit all: map** local variations in resolution in cryo-EM reconstructions

G Cardone, JB Heymann, AC Steven - Journal of structural biology, 2013 - Elsevier
The resolution of density maps from single particle analysis is usually measured in terms of
the highest spatial frequency to which consistent information has been obtained. This …

Structure of the human MHC-I peptide-loading complex

A Blees, D Januliene, T Hofmann, N Koller, C Schmidt… - Nature, 2017 - nature.com
The peptide-loading complex (PLC) is a transient, multisubunit membrane complex in the
endoplasmic reticulum that is essential for establishing a hierarchical immune response …

Automatic local resolution-based sharpening of cryo-EM maps

E Ramírez-Aportela, JL Vilas, A Glukhova… - …, 2020 - academic.oup.com
Motivation Recent technological advances and computational developments have allowed
the reconstruction of Cryo-Electron Microscopy (cryo-EM) maps at near-atomic resolution …

Structural rearrangements of a polyketide synthase module during its catalytic cycle

JR Whicher, S Dutta, DA Hansen, WA Hale… - Nature, 2014 - nature.com
The polyketide synthase (PKS) mega-enzyme assembly line uses a modular architecture to
synthesize diverse and bioactive natural products that often constitute the core structures or …