[BOOK][B] Monomial algebras

RH Villarreal - 2001 - api.taylorfrancis.com
The main purpose of this book is to introduce algebraic, combinatorial, and computational
methods to study monomial algebras and their presentation ideals, including Stanley …

Siphons in chemical reaction networks

A Shiu, B Sturmfels - Bulletin of mathematical biology, 2010 - Springer
Siphons in a chemical reaction system are subsets of the species that have the potential of
being absent in a steady state. We present a characterization of minimal siphons in terms of …

Combinatorial mutations and block diagonal polytopes

O Clarke, A Higashitani, F Mohammadi - Collectanea Mathematica, 2021 - Springer
Matching fields were introduced by Sturmfels and Zelevinsky to study certain Newton
polytopes, and more recently have been shown to give rise to toric degenerations of various …

Multigraded commutative algebra of graph decompositions

A Engström, T Kahle, S Sullivant - Journal of Algebraic Combinatorics, 2014 - Springer
The toric fiber product is a general procedure for gluing two ideals, homogeneous with
respect to the same multigrading, to produce a new homogeneous ideal. Toric fiber products …

Decompositions of commutative monoid congruences and binomial ideals

T Kahle, E Miller - Algebra & Number Theory, 2014 - msp.org
Primary decomposition of commutative monoid congruences is insensitive to certain
features of primary decomposition in commutative rings. These features are captured by the …

Chordal networks of polynomial ideals

D Cifuentes, PA Parrilo - SIAM Journal on Applied Algebra and Geometry, 2017 - SIAM
We introduce a novel representation of structured polynomial ideals, which we refer to as
chordal networks. The sparsity structure of a polynomial system is often described by a …

Parity binomial edge ideals

T Kahle, C Sarmiento, T Windisch - Journal of Algebraic Combinatorics, 2016 - Springer
Parity binomial edge ideals of simple undirected graphs are introduced. Unlike binomial
edge ideals, they do not have square-free Gröbner bases and are radical if and only if the …

Decompositions of binomial ideals

T Kahle - Journal of Software for Algebra and Geometry, 2012 - msp.org
Abstract The Macaulay2 package Binomials contains implementations of specialized
algorithms for binomial ideals, including primary decomposition into binomial ideals. The …

Finding the maximizers of the information divergence from an exponential family

J Rauh - IEEE transactions on information theory, 2011 - ieeexplore.ieee.org
This paper investigates maximizers of the information divergence from an exponential family
\calE. It is shown that the rI-projection of a maximizer P to \calE is a convex combination of P …

Efficiently and effectively recognizing toricity of steady state varieties

D Grigoriev, A Iosif, H Rahkooy, T Sturm… - Mathematics in Computer …, 2021 - Springer
We consider the problem of testing whether the points in a complex or real variety with non-
zero coordinates form a multiplicative group or, more generally, a coset of a multiplicative …