Diversity, ecology and evolution of Archaea

BJ Baker, V De Anda, KW Seitz, N Dombrowski… - Nature …, 2020 - nature.com
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …

Common principles and best practices for engineering microbiomes

CE Lawson, WR Harcombe, R Hatzenpichler… - Nature Reviews …, 2019 - nature.com
Despite broad scientific interest in harnessing the power of Earth's microbiomes, knowledge
gaps hinder their efficient use for addressing urgent societal and environmental challenges …

Raman microspectroscopy for microbiology

KS Lee, Z Landry, FC Pereira, M Wagner… - Nature Reviews …, 2021 - nature.com
Raman microspectroscopy offers microbiologists a rapid and non-destructive technique to
assess the chemical composition of individual live microorganisms in near real time. In this …

Schrödinger's microbes: tools for distinguishing the living from the dead in microbial ecosystems

JB Emerson, RI Adams, CMB Román, B Brooks… - Microbiome, 2017 - Springer
While often obvious for macroscopic organisms, determining whether a microbe is dead or
alive is fraught with complications. Fields such as microbial ecology, environmental health …

Next-generation physiology approaches to study microbiome function at single cell level

R Hatzenpichler, V Krukenberg, RL Spietz… - Nature Reviews …, 2020 - nature.com
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …

Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea

GL Chadwick, CT Skennerton, R Laso-Pérez… - PLoS …, 2022 - journals.plos.org
The anaerobic oxidation of methane coupled to sulfate reduction is a microbially mediated
process requiring a syntrophic partnership between anaerobic methanotrophic (ANME) …

Methyl-based methanogenesis: an ecological and genomic review

CP Bueno de Mesquita, D Wu… - … and Molecular Biology …, 2023 - Am Soc Microbiol
Methyl-based methanogenesis is one of three broad categories of archaeal anaerobic
methanogenesis, including both the methyl dismutation (methylotrophic) pathway and the …

Reverse methanogenesis and respiration in methanotrophic archaea

PHA Timmers, CU Welte, JJ Koehorst, CM Plugge… - …, 2017 - Wiley Online Library
Anaerobic oxidation of methane (AOM) is catalyzed by anaerobic methane‐oxidizing
archaea (ANME) via a reverse and modified methanogenesis pathway. Methanogens can …

An automated Raman-based platform for the sorting of live cells by functional properties

KS Lee, M Palatinszky, FC Pereira, J Nguyen… - Nature …, 2019 - nature.com
Stable-isotope probing is widely used to study the function of microbial taxa in their natural
environment, but sorting of isotopically labelled microbial cells from complex samples for …

Proteome turnover in the spotlight: approaches, applications, and perspectives

AB Ross, JD Langer, M Jovanovic - Molecular & Cellular Proteomics, 2021 - ASBMB
In all cells, proteins are continuously synthesized and degraded to maintain protein
homeostasis and modify gene expression levels in response to stimuli. Collectively, the …