Beyond GWASs: illuminating the dark road from association to function

SL Edwards, J Beesley, JD French… - The American Journal of …, 2013 - cell.com
Genome-wide association studies (GWASs) have enabled the discovery of common genetic
variation contributing to normal and pathological traits and clinical drug responses, but …

Structure of linkage disequilibrium in plants

SA Flint-Garcia, JM Thornsberry… - Annual review of plant …, 2003 - annualreviews.org
Future advances in plant genomics will make it possible to scan a genome for
polymorphisms associated with qualitative and quantitative traits. Before this potential can …

Colocalization of GWAS and eQTL signals detects target genes

F Hormozdiari, M Van De Bunt, AV Segre, X Li… - The American Journal of …, 2016 - cell.com
The vast majority of genome-wide association study (GWAS) risk loci fall in non-coding
regions of the genome. One possible hypothesis is that these GWAS risk loci alter the …

Comparing different statistical models and multiple testing corrections for association map** in soybean and maize

AS Kaler, JD Gillman, T Beissinger… - Frontiers in plant …, 2020 - frontiersin.org
Association map** (AM) is a powerful tool for fine map** complex trait variation down to
nucleotide sequences by exploiting historical recombination events. A major problem in AM …

Initial sequencing and analysis of the human genome

US DOE Joint Genome Institute: Hawkins Trevor 4 … - nature, 2001 - nature.com
The human genome holds an extraordinary trove of information about human development,
physiology, medicine and evolution. Here we report the results of an international …

Linkage disequilibrium in humans: models and data

JK Pritchard, M Przeworski - The American Journal of Human Genetics, 2001 - cell.com
In this review, we describe recent empirical and theoretical work on the extent of linkage
disequilibrium (LD) in the human genome, comparing the predictions of simple population …

Linkage disequilibrium in the human genome

DE Reich, M Cargill, S Bolk, J Ireland, PC Sabeti… - Nature, 2001 - nature.com
With the availability of a dense genome-wide map of single nucleotide polymorphisms
(SNPs), a central issue in human genetics is whether it is now possible to use linkage …

Patterns of linkage disequilibrium in the human genome

KG Ardlie, L Kruglyak, M Seielstad - Nature Reviews Genetics, 2002 - nature.com
Particular alleles at neighbouring loci tend to be co-inherited. For tightly linked loci, this
might lead to associations between alleles in the population—a property known as linkage …

Increased accuracy of artificial selection by using the realized relationship matrix

BJ Hayes, PM Visscher, ME Goddard - Genetics research, 2009 - cambridge.org
Dense marker genotypes allow the construction of the realized relationship matrix between
individuals, with elements the realized proportion of the genome that is identical by descent …

Variation is the spice of life

L Kruglyak, DA Nickerson - Nature genetics, 2001 - nature.com
Assembling a comprehensive catalog of common human sequence polymorphisms is a key
goal of the Human Genome Project. The International SNP Map Working Group has …