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Beyond GWASs: illuminating the dark road from association to function
Genome-wide association studies (GWASs) have enabled the discovery of common genetic
variation contributing to normal and pathological traits and clinical drug responses, but …
variation contributing to normal and pathological traits and clinical drug responses, but …
Structure of linkage disequilibrium in plants
Future advances in plant genomics will make it possible to scan a genome for
polymorphisms associated with qualitative and quantitative traits. Before this potential can …
polymorphisms associated with qualitative and quantitative traits. Before this potential can …
Colocalization of GWAS and eQTL signals detects target genes
The vast majority of genome-wide association study (GWAS) risk loci fall in non-coding
regions of the genome. One possible hypothesis is that these GWAS risk loci alter the …
regions of the genome. One possible hypothesis is that these GWAS risk loci alter the …
Comparing different statistical models and multiple testing corrections for association map** in soybean and maize
Association map** (AM) is a powerful tool for fine map** complex trait variation down to
nucleotide sequences by exploiting historical recombination events. A major problem in AM …
nucleotide sequences by exploiting historical recombination events. A major problem in AM …
Initial sequencing and analysis of the human genome
US DOE Joint Genome Institute: Hawkins Trevor 4 … - nature, 2001 - nature.com
The human genome holds an extraordinary trove of information about human development,
physiology, medicine and evolution. Here we report the results of an international …
physiology, medicine and evolution. Here we report the results of an international …
Linkage disequilibrium in humans: models and data
In this review, we describe recent empirical and theoretical work on the extent of linkage
disequilibrium (LD) in the human genome, comparing the predictions of simple population …
disequilibrium (LD) in the human genome, comparing the predictions of simple population …
Linkage disequilibrium in the human genome
DE Reich, M Cargill, S Bolk, J Ireland, PC Sabeti… - Nature, 2001 - nature.com
With the availability of a dense genome-wide map of single nucleotide polymorphisms
(SNPs), a central issue in human genetics is whether it is now possible to use linkage …
(SNPs), a central issue in human genetics is whether it is now possible to use linkage …
Patterns of linkage disequilibrium in the human genome
Particular alleles at neighbouring loci tend to be co-inherited. For tightly linked loci, this
might lead to associations between alleles in the population—a property known as linkage …
might lead to associations between alleles in the population—a property known as linkage …
Increased accuracy of artificial selection by using the realized relationship matrix
Dense marker genotypes allow the construction of the realized relationship matrix between
individuals, with elements the realized proportion of the genome that is identical by descent …
individuals, with elements the realized proportion of the genome that is identical by descent …
Variation is the spice of life
Assembling a comprehensive catalog of common human sequence polymorphisms is a key
goal of the Human Genome Project. The International SNP Map Working Group has …
goal of the Human Genome Project. The International SNP Map Working Group has …