Microbiome engineering: synthetic biology of plant-associated microbiomes in sustainable agriculture

J Ke, B Wang, Y Yoshikuni - Trends in Biotechnology, 2021 - cell.com
To support an ever-increasing population, modern agriculture faces numerous challenges
that pose major threats to global food and energy security. Plant-associated microbes, with …

Microfluidics at the interface of bacteria and fresh produce

M Ranjbaran, MS Verma - Trends in Food Science & Technology, 2022 - Elsevier
Background: Understanding interactions between bacteria and fresh produce is of practical
importance in the prevention and mitigation of foodborne and plant diseases. Microfluidic …

Live imaging of root–bacteria interactions in a microfluidics setup

H Massalha, E Korenblum, S Malitsky… - Proceedings of the …, 2017 - National Acad Sciences
Plant roots play a dominant role in sha** the rhizosphere, the environment in which
interaction with diverse microorganisms occurs. Tracking the dynamics of root–microbe …

Soil-on-a-Chip: microfluidic platforms for environmental organismal studies

CE Stanley, G Grossmann, XC i Solvas, AJ deMello - Lab on a Chip, 2016 - pubs.rsc.org
Soil is the habitat of countless organisms and encompasses an enormous variety of dynamic
environmental conditions. While it is evident that a thorough understanding of how …

Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

J Sasse, J Kant, BJ Cole, AP Klein, B Arsova… - New …, 2019 - Wiley Online Library
There is a dynamic reciprocity between plants and their environment: soil physiochemical
properties influence plant morphology and metabolism, and root morphology and exudates …

Ecosystem fabrication (EcoFAB) protocols for the construction of laboratory ecosystems designed to study plant-microbe interactions

J Gao, J Sasse, KM Lewald, K Zhalnina… - JoVE (Journal of …, 2018 - jove.com
Beneficial plant-microbe interactions offer a sustainable biological solution with the potential
to boost low-input food and bioenergy production. A better mechanistic understanding of …

A microfluidic device and computational platform for high-throughput live imaging of gene expression

W Busch, BT Moore, B Martsberger, DL Mace… - Nature …, 2012 - nature.com
To fully describe gene expression dynamics requires the ability to quantitatively capture
expression in individual cells over time. Automated systems for acquiring and analyzing real …

Dual‐flow‐RootChip reveals local adaptations of roots towards environmental asymmetry at the physiological and genetic levels

CE Stanley, J Shrivastava, R Brugman… - New …, 2018 - Wiley Online Library
Roots grow in highly dynamic and heterogeneous environments. Biological activity as well
as uneven nutrient availability or localized stress factors result in diverse …

Microfluidics for interrogating live intact tissues

LF Horowitz, AD Rodriguez, T Ray… - Microsystems & …, 2020 - nature.com
The intricate microarchitecture of tissues–the “tissue microenvironment”–is a strong
determinant of tissue function. Microfluidics offers an invaluable tool to precisely stimulate …

Microfluidics-based bioassays and imaging of plant cells

N Yanagisawa, E Kozgunova… - Plant and Cell …, 2021 - academic.oup.com
Many plant processes occur in the context of and in interaction with a surrounding matrix
such as soil (eg root growth and root–microbe interactions) or surrounding tissues (eg pollen …