Studying and modelling dynamic biological processes using time-series gene expression data
Biological processes are often dynamic, thus researchers must monitor their activity at
multiple time points. The most abundant source of information regarding such dynamic …
multiple time points. The most abundant source of information regarding such dynamic …
Common markers of proliferation
ML Whitfield, LK George, GD Grant… - Nature Reviews Cancer, 2006 - nature.com
When normal tissue and tumour samples are compared by microarray analysis, the biggest
differences most often occur in the expression levels of genes that control cell proliferation …
differences most often occur in the expression levels of genes that control cell proliferation …
[HTML][HTML] Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells
Data on absolute molecule numbers will empower the modeling, understanding, and
comparison of cellular functions and biological systems. We quantified transcriptomes and …
comparison of cellular functions and biological systems. We quantified transcriptomes and …
Escape of Intracellular Shigella from Autophagy
M Ogawa, T Yoshimori, T Suzuki, H Sagara… - Science, 2005 - science.org
The degradation of undesirable cellular components or organelles, including invading
microbes, by autophagy is crucial for cell survival. Here, Shigella, an invasive bacteria, was …
microbes, by autophagy is crucial for cell survival. Here, Shigella, an invasive bacteria, was …
Counting cytokinesis proteins globally and locally in fission yeast
We used fluorescence microscopy to measure global and local concentrations of 28
cytoskeletal and signaling proteins fused to yellow fluorescent protein (YFP) in the fission …
cytoskeletal and signaling proteins fused to yellow fluorescent protein (YFP) in the fission …
Rapidly regulated genes are intron poor
We show that genes with rapidly changing expression levels in response to stress contain
significantly lower intron densities in yeasts, thale cress and mice. Therefore, we propose …
significantly lower intron densities in yeasts, thale cress and mice. Therefore, we propose …
Spatiotemporal dissection of the cell cycle with single-cell proteogenomics
The cell cycle, over which cells grow and divide, is a fundamental process of life. Its
dysregulation has devastating consequences, including cancer,–. The cell cycle is driven by …
dysregulation has devastating consequences, including cancer,–. The cell cycle is driven by …
Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes
The eukaryotic cell division cycle is a highly regulated process that consists of a complex
series of events and involves thousands of proteins. Researchers have studied the …
series of events and involves thousands of proteins. Researchers have studied the …
Current approaches to gene regulatory network modelling
Many different approaches have been developed to model and simulate gene regulatory
networks. We proposed the following categories for gene regulatory network models …
networks. We proposed the following categories for gene regulatory network models …
Secrets of a double agent: CDK7 in cell-cycle control and transcription
RP Fisher - Journal of cell science, 2005 - journals.biologists.com
In metazoans, cyclin-dependent kinase 7 (CDK7) has essential roles in both the cell-division
cycle and transcription, as a CDK-activating kinase (CAK) and as a component of the …
cycle and transcription, as a CDK-activating kinase (CAK) and as a component of the …