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Epigenetics as a mediator of plasticity in cancer
The concept of an epigenetic landscape describing potential cellular fates arising from
pluripotent cells, first advanced by Conrad Waddington, has evolved in light of experiments …
pluripotent cells, first advanced by Conrad Waddington, has evolved in light of experiments …
A guide to ERK dynamics, part 2: downstream decoding
A Ram, D Murphy, N DeCuzzi, M Patankar… - Biochemical …, 2023 - portlandpress.com
Signaling by the extracellular signal-regulated kinase (ERK) pathway controls many cellular
processes, including cell division, death, and differentiation. In this second installment of a …
processes, including cell division, death, and differentiation. In this second installment of a …
Intrinsic dynamics of a human gene reveal the basis of expression heterogeneity
Transcriptional regulation in metazoans occurs through long-range genomic contacts
between enhancers and promoters, and most genes are transcribed in episodic" bursts" of …
between enhancers and promoters, and most genes are transcribed in episodic" bursts" of …
A foundation model for cell segmentation
Cells are a fundamental unit of biological organization, and identifying them in imaging data–
cell segmentation–is a critical task for various cellular imaging experiments. While deep …
cell segmentation–is a critical task for various cellular imaging experiments. While deep …
Imaging mRNA in vivo, from birth to death
RNA is the fundamental information transfer system in the cell. The ability to follow single
messenger RNAs (mRNAs) from transcription to degradation with fluorescent probes gives …
messenger RNAs (mRNAs) from transcription to degradation with fluorescent probes gives …
[HTML][HTML] NFAT and NF-κB dynamically co-regulate TCR and CAR signaling responses in human T cells
While it has been established that the responses of T cells to antigens are combinatorially
regulated by multiple signaling pathways, it remains elusive what mechanisms cells utilize to …
regulated by multiple signaling pathways, it remains elusive what mechanisms cells utilize to …
Pulsatile inputs achieve tunable attenuation of gene expression variability and graded multi-gene regulation
Many natural transcription factors are regulated in a pulsatile fashion, but it remains
unknown whether synthetic gene expression systems can benefit from such dynamic …
unknown whether synthetic gene expression systems can benefit from such dynamic …
MYC amplifies gene expression through global changes in transcription factor dynamics
The MYC oncogene has been studied for decades, yet there is still intense debate over how
this transcription factor controls gene expression. Here, we seek to answer these questions …
this transcription factor controls gene expression. Here, we seek to answer these questions …
Single-cell and single-molecule analysis of gene expression regulation
Recent advancements in single-cell and single-molecule imaging technologies have
resolved biological processes in time and space that are fundamental to understanding the …
resolved biological processes in time and space that are fundamental to understanding the …
Linear integration of ERK activity predominates over persistence detection in Fra-1 regulation
ERK signaling regulates the expression of target genes, but it is unclear how ERK activity
dynamics are interpreted. Here, we investigate this question using simultaneous, live, single …
dynamics are interpreted. Here, we investigate this question using simultaneous, live, single …