Epigenetics as a mediator of plasticity in cancer

AP Feinberg, A Levchenko - Science, 2023 - science.org
The concept of an epigenetic landscape describing potential cellular fates arising from
pluripotent cells, first advanced by Conrad Waddington, has evolved in light of experiments …

Imaging mRNA in vivo, from birth to death

E Tutucci, NM Livingston, RH Singer… - Annual review of …, 2018 - annualreviews.org
RNA is the fundamental information transfer system in the cell. The ability to follow single
messenger RNAs (mRNAs) from transcription to degradation with fluorescent probes gives …

A foundation model for cell segmentation

U Israel, M Marks, R Dilip, Q Li, C Yu, E Laubscher… - …, 2024 - pmc.ncbi.nlm.nih.gov
Cells are a fundamental unit of biological organization, and identifying them in imaging data–
cell segmentation–is a critical task for various cellular imaging experiments. While deep …

Intrinsic dynamics of a human gene reveal the basis of expression heterogeneity

J Rodriguez, G Ren, CR Day, K Zhao, CC Chow… - Cell, 2019 - cell.com
Transcriptional regulation in metazoans occurs through long-range genomic contacts
between enhancers and promoters, and most genes are transcribed in episodic" bursts" of …

Pulsatile inputs achieve tunable attenuation of gene expression variability and graded multi-gene regulation

D Benzinger, M Khammash - Nature communications, 2018 - nature.com
Many natural transcription factors are regulated in a pulsatile fashion, but it remains
unknown whether synthetic gene expression systems can benefit from such dynamic …

Advances in automated and reactive flow cytometry for synthetic biotechnology

F Delvigne, JA Martinez - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•The accessibility to automated flow cytometry equipment has recently been
increased through the open science initiative.•Automated and reactive flow cytometry can be …

Single-cell and single-molecule analysis of gene expression regulation

M Vera, J Biswas, A Senecal, RH Singer… - Annual review of …, 2016 - annualreviews.org
Recent advancements in single-cell and single-molecule imaging technologies have
resolved biological processes in time and space that are fundamental to understanding the …

A guide to ERK dynamics, part 2: downstream decoding

A Ram, D Murphy, N DeCuzzi, M Patankar… - Biochemical …, 2023 - portlandpress.com
Signaling by the extracellular signal-regulated kinase (ERK) pathway controls many cellular
processes, including cell division, death, and differentiation. In this second installment of a …

[HTML][HTML] NFAT and NF-κB dynamically co-regulate TCR and CAR signaling responses in human T cells

W Huang, W Lin, B Chen, J Zhang, P Gao, Y Fan, Y Lin… - Cell Reports, 2023 - cell.com
While it has been established that the responses of T cells to antigens are combinatorially
regulated by multiple signaling pathways, it remains elusive what mechanisms cells utilize to …

MYC amplifies gene expression through global changes in transcription factor dynamics

S Patange, DA Ball, Y Wan, TS Karpova, M Girvan… - Cell reports, 2022 - cell.com
The MYC oncogene has been studied for decades, yet there is still intense debate over how
this transcription factor controls gene expression. Here, we seek to answer these questions …