The human phenotype ontology in 2017

S Köhler, NA Vasilevsky, M Engelstad… - Nucleic acids …, 2017 - academic.oup.com
Deep phenoty** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

A census of human RNA-binding proteins

S Gerstberger, M Hafner, T Tuschl - Nature Reviews Genetics, 2014 - nature.com
Post-transcriptional gene regulation (PTGR) concerns processes involved in the maturation,
transport, stability and translation of coding and non-coding RNAs. RNA-binding proteins …

Dual domestications and origin of traits in grapevine evolution

Y Dong, S Duan, Q ** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures

NK Fox, SE Brenner, JM Chandonia - Nucleic acids research, 2014 - academic.oup.com
Abstract Structural Classification of Proteins—extended (SCOPe, http://scop. berkeley. edu)
is a database of protein structural relationships that extends the SCOP database. SCOP is a …

[HTML][HTML] Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation

DE Weinberg, P Shah, SW Eichhorn, JA Hussmann… - Cell reports, 2016 - cell.com
Ribosome-footprint profiling provides genome-wide snapshots of translation, but technical
challenges can confound its analysis. Here, we use improved methods to obtain ribosome …

The evolution of compositionally and functionally distinct actin filaments

PW Gunning, U Ghoshdastider… - Journal of cell …, 2015 - journals.biologists.com
The actin filament is astonishingly well conserved across a diverse set of eukaryotic species.
It has essentially remained unchanged in the billion years that separate yeast, Arabidopsis …

From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease

M Sun, WL Kraus - Endocrine reviews, 2015 - academic.oup.com
Long noncoding RNAs (lncRNAs) are a relatively poorly understood class of RNAs with little
or no coding capacity transcribed from a set of incompletely annotated genes. They have …

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

M Lechner, S Findeiß, L Steiner, M Marz, PF Stadler… - BMC …, 2011 - Springer
Background Orthology analysis is an important part of data analysis in many areas of
bioinformatics such as comparative genomics and molecular phylogenetics. The ever …