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Scientific discovery games for biomedical research
Over the past decade, scientific discovery games (SDGs) have emerged as a viable
approach for biomedical research, engaging hundreds of thousands of volunteer players …
approach for biomedical research, engaging hundreds of thousands of volunteer players …
RNA design via structure-aware multifrontier ensemble optimization
Motivation RNA design is the search for a sequence or set of sequences that will fold to
desired structure, also known as the inverse problem of RNA folding. However, the …
desired structure, also known as the inverse problem of RNA folding. However, the …
gRNAde: Geometric Deep Learning for 3D RNA inverse design
Computational RNA design tasks are often posed as inverse problems, where sequences
are designed based on adopting a single desired secondary structure without considering …
are designed based on adopting a single desired secondary structure without considering …
Fitness functions for RNA structure design
An RNA design algorithm takes a target RNA structure and finds a sequence that folds into
that structure. This is fundamentally important for engineering therapeutics using RNA …
that structure. This is fundamentally important for engineering therapeutics using RNA …
Rnaformer: A simple yet effective deep learning model for rna secondary structure prediction
Traditional RNA secondary structure prediction methods, based on dynamic programming,
often fall short in accuracy. Recent advances in deep learning have aimed to address this …
often fall short in accuracy. Recent advances in deep learning have aimed to address this …
Community science designed ribosomes with beneficial phenotypes
Functional design of ribosomes with mutant ribosomal RNA (rRNA) can expand
opportunities for understanding molecular translation, building cells from the bottom-up, and …
opportunities for understanding molecular translation, building cells from the bottom-up, and …
An unexpectedly effective Monte Carlo technique for the RNA inverse folding problem
F Portela - BioRxiv, 2018 - biorxiv.org
Solving the RNA inverse folding problem, also known as the RNA design problem, is critical
to advance several scientific fields like bioengineering, yet existing approaches have had …
to advance several scientific fields like bioengineering, yet existing approaches have had …
RnaBench: A Comprehensive Library for In Silico RNA Modelling
ABSTRACT RNA is a crucial regulator in living organisms and malfunctions can lead to
severe diseases. To explore RNA-based therapeutics and applications, computational …
severe diseases. To explore RNA-based therapeutics and applications, computational …
A QUBO model of the RNA folding problem optimized by variational hybrid quantum annealing
RNAs self-interact through hydrogen-bond base-pairing between nucleotides and fold into
specific, stable structures that substantially govern their biochemical behaviour …
specific, stable structures that substantially govern their biochemical behaviour …
EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame
Emerging RNA-based approaches to disease detection and gene therapy require RNA
sequences that fold into specific base-pairing patterns, but computational algorithms …
sequences that fold into specific base-pairing patterns, but computational algorithms …