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From integrative structural biology to cell biology
A Sali - Journal of Biological Chemistry, 2021 - jbc.org
Integrative modeling is an increasingly important tool in structural biology, providing
structures by combining data from varied experimental methods and prior information. As a …
structures by combining data from varied experimental methods and prior information. As a …
[HTML][HTML] Hybrid methods for combined experimental and computational determination of protein structure
Knowledge of protein structure is paramount to the understanding of biological function,
develo** new therapeutics, and making detailed mechanistic hypotheses. Therefore …
develo** new therapeutics, and making detailed mechanistic hypotheses. Therefore …
CryoFold: determining protein structures and data-guided ensembles from cryo-EM density maps
Cryoelectron microscopy requires molecular modeling for refinement of structures.
Ensemble models arrive at low free-energy molecular structures, but are computationally …
Ensemble models arrive at low free-energy molecular structures, but are computationally …
[HTML][HTML] Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB
Cryogenic electron microscopy (cryo-EM) methods began to be used in the mid-1970s to
study thin and periodic arrays of proteins. Following a half-century of development in cryo …
study thin and periodic arrays of proteins. Following a half-century of development in cryo …
Improving SARS-CoV-2 structures: Peer review by early coordinate release
This work builds upon the record-breaking speed and generous immediate release of new
experimental three-dimensional structures of the severe acute respiratory syndrome …
experimental three-dimensional structures of the severe acute respiratory syndrome …
CryoFold: Ab-initio structure determination from electron density maps using molecular dynamics
Cryo-EM is a powerful method for determining biomolecular structures. But, unlike X-ray
crystallography or solution-state NMR, which are data-rich, cryo-EM can be data-poor. Cryo …
crystallography or solution-state NMR, which are data-rich, cryo-EM can be data-poor. Cryo …
League of Brazilian Bioinformatics: a competition framework to promote scientific training
Background the scientific training to become a bioinformatician includes multidisciplinary
abilities, which increase the challenges to professional development. Competition …
abilities, which increase the challenges to professional development. Competition …
Synthqa-hierarchical machine learning-based protein quality assessment
Motivation It has been a challenge for biologists to determine 3D shapes of proteins from a
linear chain of amino acids and understand how proteins carry out life's tasks. Experimental …
linear chain of amino acids and understand how proteins carry out life's tasks. Experimental …