Multi‐label learning: a review of the state of the art and ongoing research

E Gibaja, S Ventura - Wiley Interdisciplinary Reviews: Data …, 2014‏ - Wiley Online Library
Multi‐label learning is quite a recent supervised learning paradigm. Owing to its capabilities
to improve performance in problems where a pattern may have more than one associated …

Supervised learning with decision tree-based methods in computational and systems biology

P Geurts, A Irrthum, L Wehenkel - Molecular Biosystems, 2009‏ - pubs.rsc.org
At the intersection between artificial intelligence and statistics, supervised learning allows
algorithms to automatically build predictive models from just observations of a system …

A survey of hierarchical classification across different application domains

CN Silla, AA Freitas - Data mining and knowledge discovery, 2011‏ - Springer
In this survey we discuss the task of hierarchical classification. The literature about this field
is scattered across very different application domains and for that reason research in one …

Hierarchical text classification with reinforced label assignment

Y Mao, J Tian, J Han, X Ren - arxiv preprint arxiv:1908.10419, 2019‏ - arxiv.org
While existing hierarchical text classification (HTC) methods attempt to capture label
hierarchies for model training, they either make local decisions regarding each label or …

Hierarchical multi-label prediction of gene function

Z Barutcuoglu, RE Schapire, OG Troyanskaya - Bioinformatics, 2006‏ - academic.oup.com
Motivation: Assigning functions for unknown genes based on diverse large-scale data is a
key task in functional genomics. Previous work on gene function prediction has addressed …

[HTML][HTML] Hierarchical multi-label classification using local neural networks

R Cerri, RC Barros, AC De Carvalho - Journal of Computer and System …, 2014‏ - Elsevier
Hierarchical multi-label classification is a complex classification task where the classes
involved in the problem are hierarchically structured and each example may simultaneously …

Predicting gene function using hierarchical multi-label decision tree ensembles

L Schietgat, C Vens, J Struyf, H Blockeel, D Kocev… - BMC …, 2010‏ - Springer
Background S. cerevisiae, A. thaliana and M. musculus are well-studied organisms in
biology and the sequencing of their genomes was completed many years ago. It is still a …

Finding function: evaluation methods for functional genomic data

CL Myers, DR Barrett, MA Hibbs, C Huttenhower… - BMC genomics, 2006‏ - Springer
Background Accurate evaluation of the quality of genomic or proteomic data and
computational methods is vital to our ability to use them for formulating novel biological …

Automated prediction of protein function and detection of functional sites from structure

F Pazos, MJE Sternberg - Proceedings of the National Academy of …, 2004‏ - pnas.org
Current structural genomics projects are yielding structures for proteins whose functions are
unknown. Accordingly, there is a pressing requirement for computational methods for …

The use of classification trees for bioinformatics

X Chen, M Wang, H Zhang - Wiley Interdisciplinary Reviews …, 2011‏ - Wiley Online Library
Classification trees are nonparametric statistical learning methods that incorporate feature
selection and interactions, possess intuitive interpretability, are efficient, and have high …