Signaling and transcriptional networks in heart development and regeneration

BG Bruneau - Cold Spring Harbor perspectives in …, 2013 - cshperspectives.cshlp.org
The mammalian heart is the first functional organ, the first indicator of life. Its normal
formation and function are essential for fetal life. Defects in heart formation lead to …

Transcription factor pathways and congenital heart disease

DJ McCulley, BL Black - Current topics in developmental biology, 2012 - Elsevier
Congenital heart disease is a major cause of morbidity and mortality throughout life.
Mutations in numerous transcription factors have been identified in patients and families with …

Modeling the mitochondrial cardiomyopathy of Barth syndrome with induced pluripotent stem cell and heart-on-chip technologies

G Wang, ML McCain, L Yang, A He, FS Pasqualini… - Nature medicine, 2014 - nature.com
Study of monogenic mitochondrial cardiomyopathies may yield insights into mitochondrial
roles in cardiac development and disease. Here, we combined patient-derived and …

The accessible chromatin landscape of the human genome

RE Thurman, E Rynes, R Humbert, J Vierstra… - Nature, 2012 - nature.com
DNase I hypersensitive sites (DHSs) are markers of regulatory DNA and have underpinned
the discovery of all classes of cis-regulatory elements including enhancers, promoters …

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

SG Landt, GK Marinov, A Kundaje… - Genome …, 2012 - genome.cshlp.org
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-
seq) has become a valuable and widely used approach for map** the genomic location of …

The DNA damage response induces inflammation and senescence by inhibiting autophagy of GATA4

C Kang, Q Xu, TD Martin, MZ Li, M Demaria, L Aron… - Science, 2015 - science.org
INTRODUCTION Cellular senescence is a program of arrested proliferation and altered
gene expression triggered by many stresses. Although it is a potent tumor-suppressive …

An Erythroid Enhancer of BCL11A Subject to Genetic Variation Determines Fetal Hemoglobin Level

DE Bauer, SC Kamran, S Lessard, J Xu, Y Fujiwara… - Science, 2013 - science.org
Genome-wide association studies (GWASs) have ascertained numerous trait-associated
common genetic variants, frequently localized to regulatory DNA. We found that common …

Latent enhancers activated by stimulation in differentiated cells

R Ostuni, V Piccolo, I Barozzi, S Polletti, A Termanini… - Cell, 2013 - cell.com
According to current models, once the cell has reached terminal differentiation, the enhancer
repertoire is completely established and maintained by cooperatively acting lineage-specific …

β-Catenin-driven cancers require a YAP1 transcriptional complex for survival and tumorigenesis

J Rosenbluh, D Nijhawan, AG Cox, X Li, JT Neal… - Cell, 2012 - cell.com
Wnt/β-catenin signaling plays a key role in the pathogenesis of colon and other cancers;
emerging evidence indicates that oncogenic β-catenin regulates several biological …

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

JA Wamstad, JM Alexander, RM Truty, A Shrikumar… - Cell, 2012 - cell.com
Heart development is exquisitely sensitive to the precise temporal regulation of thousands of
genes that govern developmental decisions during differentiation. However, we currently …