Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
The widespread occurrence of repetitive stretches of DNA in genomes of organisms across
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
Overcoming Fish Defences: The Virulence Factors of Yersinia ruckeri
Yersinia ruckeri is the causative agent of enteric redmouth disease, a bacterial infection of
marine and freshwater fish. The disease mainly affects salmonids, and outbreaks have …
marine and freshwater fish. The disease mainly affects salmonids, and outbreaks have …
Metabolic and genetic basis for auxotrophies in Gram-negative species
Auxotrophies constrain the interactions of bacteria with their environment, but are often
difficult to identify. Here, we develop an algorithm (AuxoFind) using genome-scale metabolic …
difficult to identify. Here, we develop an algorithm (AuxoFind) using genome-scale metabolic …
Effect of glyphosate, its metabolite AMPA, and the glyphosate formulation Roundup® on brown trout (Salmo trutta f. fario) gut microbiome diversity
Glyphosate is used worldwide as a compound of pesticides and is detectable in many
environmental compartments. It enters water bodies primarily through drift from agricultural …
environmental compartments. It enters water bodies primarily through drift from agricultural …
RTX adhesins are key bacterial surface megaproteins in the formation of biofilms
Gram-negative bacteria produce repeats-in-toxin adhesion proteins (RTX adhesins) to
facilitate microbial adhesion. These large, multidomain proteins share a common …
facilitate microbial adhesion. These large, multidomain proteins share a common …
The Infection Process of Yersinia ruckeri: Reviewing the Pieces of the Jigsaw Puzzle
JA Guijarro, AI García-Torrico, D Cascales… - Frontiers in cellular and …, 2018 - frontiersin.org
Finding the keys to understanding the infectious process of Yersinia ruckeri was not a
priority for many years due to the prompt development of an effective biotype 1 vaccine …
priority for many years due to the prompt development of an effective biotype 1 vaccine …
The inverse autotransporters of Yersinia ruckeri, YrInv and YrIlm, contribute to biofilm formation and virulence
A Wrobel, A Saragliadis, J Pérez‐Ortega… - Environmental …, 2020 - Wiley Online Library
Yersinia ruckeri causes enteric redmouth disease (ERM) that mainly affects salmonid fishes
and leads to significant economic losses in the aquaculture industry. An increasing number …
and leads to significant economic losses in the aquaculture industry. An increasing number …
[HTML][HTML] Comparative bioinformatic and proteomic approaches to evaluate the outer membrane proteome of the fish pathogen Yersinia ruckeri
MJ Ormsby, E Grahame, R Burchmore, RL Davies - Journal of proteomics, 2019 - Elsevier
Yersinia ruckeri is the aetiological agent of enteric redmouth (ERM) disease and is
responsible for significant economic losses in farmed salmonids. Enteric redmouth disease …
responsible for significant economic losses in farmed salmonids. Enteric redmouth disease …
Fish pathogen binding to mucins from Atlantic salmon and Arctic char differs in avidity and specificity and is modulated by fluid velocity
JT Padra, AVM Murugan, K Sundell, H Sundh… - PloS one, 2019 - journals.plos.org
Disease outbreaks are limiting factors for an ethical and economically sustainable
aquaculture industry. The first point of contact between a pathogen and a host occurs in the …
aquaculture industry. The first point of contact between a pathogen and a host occurs in the …
Host-pathogen adhesion as the basis of innovative diagnostics for emerging pathogens
Infectious diseases are an existential health threat, potentiated by emerging and re-
emerging viruses and increasing bacterial antibiotic resistance. Targeted treatment of …
emerging viruses and increasing bacterial antibiotic resistance. Targeted treatment of …