[HTML][HTML] Revealing the neurobiology underlying interpersonal neural synchronization with multimodal data fusion

LD Lotter, SH Kohl, C Gerloff, L Bell, A Niephaus… - … & biobehavioral reviews, 2023 - Elsevier
Humans synchronize with one another to foster successful interactions. Here, we use a
multimodal data fusion approach with the aim of elucidating the neurobiological …

Identification of disease treatment mechanisms through the multiscale interactome

C Ruiz, M Zitnik, J Leskovec - Nature communications, 2021 - nature.com
Most diseases disrupt multiple proteins, and drugs treat such diseases by restoring the
functions of the disrupted proteins. How drugs restore these functions, however, is often …

ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

A Brionne, A Juanchich, C Hennequet-Antier - BioData mining, 2019 - Springer
The main objective of ViSEAGO package is to carry out a data mining of biological functions
and establish links between genes involved in the study. We developed ViSEAGO in R to …

Summary visualizations of gene ontology terms with GO-Figure!

MJMF Reijnders, RM Waterhouse - Frontiers in Bioinformatics, 2021 - frontiersin.org
The Gene Ontology (GO) is a cornerstone of functional genomics research that drives
discoveries through knowledge-informed computational analysis of biological data from …

[PDF][PDF] Gene ontology: pitfalls, biases, and remedies

P Gaudet, C Dessimoz - The gene ontology handbook, 2017 - library.oapen.org
Abstract The Gene Ontology (GO) is a formidable resource, but there are several
considerations about it that are essential to understand the data and interpret it correctly …

[PDF][PDF] Primer on the gene ontology

P Gaudet, N Škunca, JC Hu… - The Gene Ontology …, 2017 - library.oapen.org
Abstract The Gene Ontology (GO) project is the largest resource for cataloguing gene
function. The combination of solid conceptual underpinnings and a practical set of features …

[PDF][PDF] Primer on ontologies

J Hastings - The gene ontology handbook, 2017 - library.oapen.org
As molecular biology has increasingly become a data-intensive discipline, ontologies have
emerged as an essential computational tool to assist in the organisation, description and …

Graph-based exploitation of gene ontology using GOxploreR for scrutinizing biological significance

K Manjang, S Tripathi, O Yli-Harja, M Dehmer… - Scientific reports, 2020 - nature.com
Gene ontology (GO) is an eminent knowledge base frequently used for providing biological
interpretations for the analysis of genes or gene sets from biological, medical and clinical …

[PDF][PDF] Towards Semantic Integration for Explainable Artificial Intelligence in the Biomedical Domain.

C Pesquita - HEALTHINF, 2021 - pdfs.semanticscholar.org
Explainable artificial intelligence typically focuses on data-based explanations, lacking the
semantic context needed to produce human-centric explanations. This is especially relevant …