Organization and regulation of gene transcription

P Cramer - Nature, 2019 - nature.com
The regulated transcription of genes determines cell identity and function. Recent structural
studies have elucidated mechanisms that govern the regulation of transcription by RNA …

Structural insights into nuclear transcription by eukaryotic DNA-dependent RNA polymerases

M Girbig, AD Misiaszek, CW Müller - Nature reviews Molecular cell …, 2022 - nature.com
The eukaryotic transcription apparatus synthesizes a staggering diversity of RNA molecules.
The labour of nuclear gene transcription is, therefore, divided among multiple DNA …

Structural insights into preinitiation complex assembly on core promoters

X Chen, Y Qi, Z Wu, X Wang, J Li, D Zhao, H Hou, Y Li… - Science, 2021 - science.org
INTRODUCTION RNA polymerase II (Pol II)–mediated transcription initiation requires
assembly of a preinitiation complex (PIC), during which the 14-subunit transcription factor IID …

50+ years of eukaryotic transcription: an expanding universe of factors and mechanisms

RG Roeder - Nature structural & molecular biology, 2019 - nature.com
The landmark 1969 discovery of nuclear RNA polymerases I, II and III in diverse eukaryotes
represented a major turning point in the field that, with subsequent elucidation of the distinct …

Structural basis of transcription initiation by RNA polymerase II

S Sainsbury, C Bernecky, P Cramer - Nature reviews Molecular cell …, 2015 - nature.com
Transcription of eukaryotic protein-coding genes commences with the assembly of a
conserved initiation complex, which consists of RNA polymerase II (Pol II) and the general …

An expansive human regulatory lexicon encoded in transcription factor footprints

S Neph, J Vierstra, AB Stergachis, AP Reynolds… - Nature, 2012 - nature.com
Regulatory factor binding to genomic DNA protects the underlying sequence from cleavage
by DNase I, leaving nucleotide-resolution footprints. Using genomic DNase I footprinting …

A heterochromatin-dependent transcription machinery drives piRNA expression

PR Andersen, L Tirian, M Vunjak, J Brennecke - Nature, 2017 - nature.com
Nuclear small RNA pathways safeguard genome integrity by establishing transcription-
repressing heterochromatin at transposable elements. This inevitably also targets the …

Near-atomic resolution visualization of human transcription promoter opening

Y He, C Yan, J Fang, C Inouye, R Tjian, I Ivanov… - Nature, 2016 - nature.com
In eukaryotic transcription initiation, a large multi-subunit pre-initiation complex (PIC) that
assembles at the core promoter is required for the opening of the duplex DNA and …

Genome-wide structure and organization of eukaryotic pre-initiation complexes

HS Rhee, BF Pugh - Nature, 2012 - nature.com
Transcription and regulation of genes originate from transcription pre-initiation complexes
(PICs). Their structural and positional organization across eukaryotic genomes is unknown …

Architecture of the RNA polymerase II–Mediator core initiation complex

C Plaschka, L Lariviere, L Wenzeck, M Seizl… - Nature, 2015 - nature.com
The conserved co-activator complex Mediator enables regulated transcription initiation by
RNA polymerase (Pol) II. Here we reconstitute an active 15-subunit core Mediator (cMed) …