Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
A new view of the fish gut microbiome: advances from next-generation sequencing
The fish gut microbiota contributes to digestion and can affect the nutrition, growth,
reproduction, overall population dynamics and vulnerability of the host fish to disease; …
reproduction, overall population dynamics and vulnerability of the host fish to disease; …
Estuarine plastisphere as an overlooked source of N2O production
X Su, L Yang, K Yang, Y Tang, T Wen, Y Wang… - Nature …, 2022 - nature.com
Abstract “Plastisphere”, microbial communities colonizing plastic debris, has sparked global
concern for marine ecosystems. Microbiome inhabiting this novel human-made niche has …
concern for marine ecosystems. Microbiome inhabiting this novel human-made niche has …
Primer, pipelines, parameters: issues in 16S rRNA gene sequencing
Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies
investigating microbiomes. However, comparative studies on differences in procedures are …
investigating microbiomes. However, comparative studies on differences in procedures are …
Continental-scale pollution of estuaries with antibiotic resistance genes
Antibiotic resistance genes (ARGs) have moved from the environmental resistome into
human commensals and pathogens, driven by human selection with antimicrobial agents …
human commensals and pathogens, driven by human selection with antimicrobial agents …
Antibiotic resistome and its association with bacterial communities during sewage sludge composting
JQ Su, B Wei, WY Ou-Yang, FY Huang… - … science & technology, 2015 - ACS Publications
Composting is widely used for recycling of urban sewage sludge to improve soil properties,
which represents a potential pathway of spreading antibiotic resistant bacteria and genes to …
which represents a potential pathway of spreading antibiotic resistant bacteria and genes to …
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
Microbiologists utilize ribosomal RNA genes as molecular markers of taxonomy in surveys of
microbial communities. rRNA genes are often co-located as part of an rrn operon, and …
microbial communities. rRNA genes are often co-located as part of an rrn operon, and …
Nitrifying niche in estuaries is expanded by the plastisphere
X Su, X Huang, Y Zhang, L Yang, T Wen… - Nature …, 2024 - nature.com
The estuarine plastisphere, a novel ecological habitat in the Anthropocene, has garnered
global concerns. Recent geochemical evidence has pointed out its potential role in …
global concerns. Recent geochemical evidence has pointed out its potential role in …
Patterns and processes of microbial community assembly
Recent research has expanded our understanding of microbial community assembly.
However, the field of community ecology is inaccessible to many microbial ecologists …
However, the field of community ecology is inaccessible to many microbial ecologists …
The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses
16S ribosomal RNA currently represents the most important target of study in bacterial
ecology. Its use for the description of bacterial diversity is, however, limited by the presence …
ecology. Its use for the description of bacterial diversity is, however, limited by the presence …