Comprehensive analysis of computational methods for predicting anti-inflammatory peptides

A Raza, J Uddin, S Akbar, FK Alarfaj, Q Zou… - … Methods in Engineering, 2024 - Springer
Inflammation is a biological resistant response to harmful stimuli, such as infection,
damaged cells, toxic chemicals, or tissue injuries. Inflammation eradicates pathogenic …

Recent advances in machine learning-based models for prediction of antiviral peptides

F Ali, H Kumar, W Alghamdi, FA Kateb… - Archives of Computational …, 2023 - Springer
Viruses have killed and infected millions of people across the world. It causes several
chronic diseases like COVID-19, HIV, and hepatitis. To cope with such diseases and virus …

iAFPs-EnC-GA: identifying antifungal peptides using sequential and evolutionary descriptors based multi-information fusion and ensemble learning approach

A Ahmad, S Akbar, M Tahir, M Hayat, F Ali - Chemometrics and Intelligent …, 2022 - Elsevier
Fungal infections have become a serious health concern for human beings worldwide.
Fungal infections usually occur when the invading fungus appear on a particular part of the …

XGB-DrugPred: computational prediction of druggable proteins using eXtreme gradient boosting and optimized features set

R Sikander, A Ghulam, F Ali - Scientific reports, 2022 - nature.com
Accurate identification of drug-targets in human body has great significance for designing
novel drugs. Compared with traditional experimental methods, prediction of drug-targets via …

AFP-CMBPred: Computational identification of antifreeze proteins by extending consensus sequences into multi-blocks evolutionary information

F Ali, S Akbar, A Ghulam, ZA Maher, A Unar… - Computers in Biology …, 2021 - Elsevier
In extremely cold environments, living organisms like plants, animals, fishes, and microbes
can die due to the intracellular ice formation in their bodies. To sustain life in such cold …

AIPs-DeepEnC-GA: Predicting anti-inflammatory peptides using embedded evolutionary and sequential feature integration with genetic algorithm based deep …

A Raza, J Uddin, Q Zou, S Akbar, W Alghamdi… - … and Intelligent Laboratory …, 2024 - Elsevier
Inflammation is a biological response to harmful stimuli including infections, damaged cells,
tissue injuries, and toxic chemicals. It plays an essential role in facilitating tissue repair by …

Deep-AntiFP: Prediction of antifungal peptides using distanct multi-informative features incorporating with deep neural networks

A Ahmad, S Akbar, S Khan, M Hayat, F Ali… - Chemometrics and …, 2021 - Elsevier
World widely, Fungal infections have become a serious issue for human beings. Fungal
infections normally happen once invading fungus appear on a specific area of the body and …

iHBP-DeepPSSM: Identifying hormone binding proteins using PsePSSM based evolutionary features and deep learning approach

S Akbar, S Khan, F Ali, M Hayat, M Qasim… - … and Intelligent Laboratory …, 2020 - Elsevier
Hormone binding proteins (HBPs) are soluble carrier proteins that can non-covalently and
selectively interact with the human hormone. HBPs plays a significant role in human life, but …

DBP-CNN: Deep learning-based prediction of DNA-binding proteins by coupling discrete cosine transform with two-dimensional convolutional neural network

O Barukab, F Ali, W Alghamdi, Y Bassam… - Expert Systems with …, 2022 - Elsevier
To improve the prediction of DNA-binding Proteins (DBPs), this paper presents a deep
learning-based method, named DBP-CNN. To efficiently extract the important features, we …

A selective ensemble preprocessing strategy for near-infrared spectral quantitative analysis of complex samples

X Bian, K Wang, E Tan, P Diwu, F Zhang… - … and Intelligent Laboratory …, 2020 - Elsevier
Preprocessing of raw near-infrared (NIR) spectra is typically required prior to multivariate
calibration since the measured spectra of complex samples are often subject to …