Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica

J Hör, G Matera, J Vogel, S Gottesman, G Storz - EcoSal Plus, 2020 - journals.asm.org
The last few decades have led to an explosion in our understanding of the major roles that
small regulatory RNAs (sRNAs) play in regulatory circuits and the responses to stress in …

Small RNAs in bacteria and archaea: who they are, what they do, and how they do it

EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …

An overview of gene regulation in bacteria by small RNAs derived from mRNA 3′ ends

F Ponath, J Hör, J Vogel - FEMS microbiology reviews, 2022 - academic.oup.com
Over the past two decades, small noncoding RNAs (sRNAs) that regulate mRNAs by short
base pairing have gone from a curiosity to a major class of post-transcriptional regulators in …

Identifying small proteins by ribosome profiling with stalled initiation complexes

J Weaver, F Mohammad, AR Buskirk, G Storz - MBio, 2019 - journals.asm.org
Small proteins consisting of 50 or fewer amino acids have been identified as regulators of
larger proteins in bacteria and eukaryotes. Despite the importance of these molecules, the …

The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

DH Lenz, KC Mok, BN Lilley, RV Kulkarni… - Cell, 2004 - cell.com
Quorum-sensing bacteria communicate with extracellular signal molecules called
autoinducers. This process allows community-wide synchronization of gene expression. A …

An atlas of Hfq‐bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

Y Chao, K Papenfort, R Reinhardt, CM Sharma… - The EMBO …, 2012 - embopress.org
The small RNAs associated with the protein Hfq constitute one of the largest classes of post‐
transcriptional regulators known to date. Most previously investigated members of this class …

Large roles of small proteins

AT Burton, R Zeinert, G Storz - Annual Review of Microbiology, 2024 - annualreviews.org
Bacterial proteins of≤ 50 amino acids, denoted small proteins or microproteins, have been
traditionally understudied and overlooked, as standard computational, biochemical, and …

Small RNA-mediated regulation in bacteria: a growing palette of diverse mechanisms

T Dutta, S Srivastava - Gene, 2018 - Elsevier
Small RNAs (sRNAs) in bacteria have evolved with diverse mechanisms to balance their
target gene expression in response to changes in the environment. Accumulating studies on …

sRNA-mediated control in bacteria: An increasing diversity of regulatory mechanisms

MG Jørgensen, JS Pettersen, BH Kallipolitis - Biochimica et Biophysica …, 2020 - Elsevier
Small regulatory RNAs (sRNAs) act as post-transcriptional regulators controlling bacterial
adaptation to environmental changes. Our current understanding of the mechanisms …

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

A Sittka, S Lucchini, K Papenfort, CM Sharma… - PLoS …, 2008 - journals.plos.org
Recent advances in high-throughput pyrosequencing (HTPS) technology now allow a
thorough analysis of RNA bound to cellular proteins, and, therefore, of post-transcriptional …