Integrated overview of stramenopile ecology, taxonomy, and heterotrophic origin

D Jirsová, JG Wideman - The ISME Journal, 2024 - academic.oup.com
Stramenopiles represent a significant proportion of aquatic and terrestrial biota. Most
biologists can name a few, but these are limited to the phototrophic (eg diatoms and kelp) or …

Unveiling the deterministic dynamics of microbial meta-metabolism: a multi-omics investigation of anaerobic biodegradation

X Yang, K Feng, S Wang, MM Yuan, X Peng, Q He… - Microbiome, 2024 - Springer
Background Microbial anaerobic metabolism is a key driver of biogeochemical cycles,
influencing ecosystem function and health of both natural and engineered environments …

[HTML][HTML] Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems

Y Song, S Yao, X Li, T Wang, X Jiang, N Bolan… - Eco-Environment & …, 2024 - Elsevier
Soil metabolomics is an emerging approach for profiling diverse small molecule metabolites,
ie, metabolomes, in the soil. Soil metabolites, including fatty acids, amino acids, lipids …

Quantifying stochastic processes in sha** dissolved organic matter pool with high-resolution mass spectrometry

Z She, J Wang, S Wang, C He, Z Jiang… - Environmental …, 2023 - ACS Publications
Natural dissolved organic matter (DOM) represents a ubiquitous molecular mixture,
progressively characterized by spatiotemporal resolution. However, an inadequate …

Deciphering Microbe-Mediated Dissolved Organic Matter Reactome in Wastewater Treatment Plants Using Directed Paired Mass Distance

L Wang, Y Lin, J Li, Q Yu, K Xu, H Ren… - … Science & Technology, 2023 - ACS Publications
Understanding the reaction mechanism of dissolved organic matter (DOM) during
wastewater biotreatment is crucial for optimal DOM control. Here, we develop a directed …

The Hunt for Chemical Dark Matter across a River-to-Ocean Continuum

R Cai, P Yao, Y Yi, J Merder, P Li… - Environmental Science & …, 2024 - ACS Publications
Thousands of mass peaks emerge during molecular characterization of natural dissolved
organic matter (DOM) using ultrahigh-resolution mass spectrometry. While mass peaks …

Ecosystem ecology needs an ecology of molecules

EC Freeman, T Peller, F Altermatt - Trends in Ecology & Evolution, 2025 - cell.com
Ecosystem ecology needs a framework that explicitly considers the roles of organic
compounds. The ecology of molecules integrates compound identity, diversity, and …

Diverse biological communities promote SOM molecular diversity and compositional transformations during natural fallow stage in paddy fields

G Gao, P Li, M Liu, J Cui, M Wu, Z Li - Carbon Research, 2024 - Springer
Monoculture cultivation patterns in agro-ecosystems only provide less varied soil organic
matter (SOM) molecules of plant origin. Whether and how the natural fallow stage between …

Logging disrupts the ecology of molecules in headwater streams

EC Freeman, EJS Emilson, K Webster, T Dittmar… - bioRxiv, 2023 - biorxiv.org
Global demand for wood products is increasing forest harvest. One understudied
consequence of logging is that it accelerates mobilization of dissolved organic matter (DOM) …

Logging impacts the ecology of molecules in headwater streams

E Freeman - 2023 - repository.cam.ac.uk
Forest management and harvest offer a promising means of combating climate change by
removing CO 2 from the atmosphere. However, most forest carbon (C) is held in soils. Thus …