[HTML][HTML] Systems biology approaches integrated with artificial intelligence for optimized metabolic engineering

M Helmy, D Smith, K Selvarajoo - Metabolic engineering communications, 2020 - Elsevier
Metabolic engineering aims to maximize the production of bio-economically important
substances (compounds, enzymes, or other proteins) through the optimization of the …

[HTML][HTML] Perspective: multiomics and machine learning help unleash the alternative food potential of microalgae

M Helmy, H Elhalis, Y Liu, Y Chow, K Selvarajoo - Advances in Nutrition, 2023 - Elsevier
Food security has become a pressing issue in the modern world. The ever-increasing world
population, ongoing COVID-19 pandemic, and political conflicts together with climate …

The molecular mechanisms of TLR‐signaling cooperation in cytokine regulation

Q Liu, JL Ding - Immunology and cell biology, 2016 - Wiley Online Library
Innate immune cells recognize pathogens through pattern recognition receptors (PRRs),
and activation of PRRs induces downstream signaling pathways to mount appropriate …

The microtubule regulator stathmin is an endogenous protein agonist for TLR3

M Bsibsi, JJ Bajramovic, MHJ Vogt… - The Journal of …, 2010 - journals.aai.org
TLR3 recognizes dsRNAs and is considered of key importance to antiviral host-defense
responses. TLR3 also triggers neuroprotective responses in astrocytes and controls the …

Innate immune memory and homeostasis may be conferred through crosstalk between the TLR3 and TLR7 pathways

B Liu, Q Liu, L Yang, SK Palaniappan, I Bahar… - Science …, 2016 - science.org
Toll-like receptors (TLRs) recognize pathogen-associated molecular patterns (PAMPs) and
stimulate the innate immune response through the production of cytokines. The innate …

Can digital twin efforts shape microorganism-based alternative food?

M Helmy, H Elhalis, MM Rashid, K Selvarajoo - Current Opinion in …, 2024 - Elsevier
Highlights•Microorganism-based alternative food holds great potential for addressing future
food security challenges.•Significant challenges remain due to the highly reductionist nature …

A systems biology approach to suppress TNF-induced proinflammatory gene expressions

K Hayashi, V Piras, S Tabata, M Tomita… - Cell Communication and …, 2013 - Springer
Background Tumor necrosis factor (TNF) is a widely studied cytokine (ligand) that induces
proinflammatory signaling and regulates myriad cellular processes. In major illnesses, such …

Systems biology to understand and regulate human retroviral proinflammatory response

M Helmy, K Selvarajoo - Frontiers in Immunology, 2021 - frontiersin.org
The majority of human genome are non-coding genes. Recent research have revealed that
about half of these genome sequences make up of transposable elements (TEs). A branch …

Combining mathematical models with experimentation to drive novel mechanistic insights into macrophage function

JE Jansen, EA Gaffney, J Wagg, MC Coles - Frontiers in immunology, 2019 - frontiersin.org
This perspective outlines an approach to improve mechanistic understanding of
macrophages in inflammation and tissue homeostasis, with a focus on human inflammatory …

A systems biology approach to overcome TRAIL resistance in cancer treatment

K Selvarajoo - Progress in Biophysics and Molecular Biology, 2017 - Elsevier
Over the last decade, our research team has investigated the dynamic responses and global
properties of living cells using systems biology approaches. More specifically, we have …