Evolution by gene loss
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …
Orthologs, paralogs, and evolutionary genomics
EV Koonin - Annu. Rev. Genet., 2005 - annualreviews.org
Orthologs and paralogs are two fundamentally different types of homologous genes that
evolved, respectively, by vertical descent from a single ancestral gene and by duplication …
evolved, respectively, by vertical descent from a single ancestral gene and by duplication …
Insights into land plant evolution garnered from the Marchantia polymorpha genome
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …
an ancestral charophycean alga from which they inherited developmental, biochemical, and …
Phytozome: a comparative platform for green plant genomics
DM Goodstein, S Shu, R Howson… - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies …
rapidly with the advent of both an increased focus on plant genomics from funding agencies …
MycoCosm portal: gearing up for 1000 fungal genomes
IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …
Department of Energy Joint Genome Institute to support integration, analysis and …
The Ecoresponsive Genome of Daphnia pulex
We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200
megabases and contains at least 30,907 genes. The high gene count is a consequence of …
megabases and contains at least 30,907 genes. The high gene count is a consequence of …
The energetics of genome complexity
All complex life is composed of eukaryotic (nucleated) cells. The eukaryotic cell arose from
prokaryotes just once in four billion years, and otherwise prokaryotes show no tendency to …
prokaryotes just once in four billion years, and otherwise prokaryotes show no tendency to …
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
Aspergillus fumigatus is exceptional among microorganisms in being both a primary and
opportunistic pathogen as well as a major allergen,,. Its conidia production is prolific, and so …
opportunistic pathogen as well as a major allergen,,. Its conidia production is prolific, and so …
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most
wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying …
wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying …
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
Trichoderma reesei is the main industrial source of cellulases and hemicellulases used to
depolymerize biomass to simple sugars that are converted to chemical intermediates and …
depolymerize biomass to simple sugars that are converted to chemical intermediates and …