Structure and function of haemoglobins

DA Gell - Blood Cells, Molecules, and Diseases, 2018 - Elsevier
Haemoglobin (Hb) is widely known as the iron-containing protein in blood that is essential
for O 2 transport in mammals. Less widely recognised is that erythrocyte Hb belongs to a …

Ab initio molecular dynamics: basic concepts, current trends and novel applications

ME Tuckerman - Journal of Physics: Condensed Matter, 2002 - iopscience.iop.org
The field of ab initio molecular dynamics (AIMD), in which finite temperature molecular
dynamics (MD) trajectories are generated with forces obtained from accurate'on the …

Density Functional Theory in Transition-Metal Chemistry: <?format ?>A Self-Consistent Hubbard Approach

HJ Kulik, M Cococcioni, DA Scherlis, N Marzari - Physical Review Letters, 2006 - APS
Transition-metal centers are the active sites for a broad variety of biological and inorganic
chemical reactions. Notwithstanding this central importance, density-functional theory …

The molecular mechanism of the catalase reaction

M Alfonso-Prieto, X Biarnés, P Vidossich… - Journal of the …, 2009 - ACS Publications
Catalases are ubiquitous enzymes that prevent cell oxidative damage by degrading
hydrogen peroxide to water and oxygen (2H2O2→ 2 H2O+ O2) with high efficiency. The …

Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation

TRM Barends, L Foucar, A Ardevol, K Nass, A Aquila… - Science, 2015 - science.org
The hemoprotein myoglobin is a model system for the study of protein dynamics. We used
time-resolved serial femtosecond crystallography at an x-ray free-electron laser to resolve …

[BOOK][B] Encyclopedia of Supramolecular Chemistry-Two-Volume Set (Print)

JL Atwood - 2013 - books.google.com
The two-volume Encyclopedia of Supramolecular Chemistry offers authoritative, centralized
information on a rapidly expanding interdisciplinary field. User-friendly and high-quality …

Spectroscopy in complex environments from QM–MM simulations

UN Morzan, DJ Alonso de Armino, NO Foglia… - Chemical …, 2018 - ACS Publications
The applications of multiscale quantum–classical (QM–MM) approaches have shown an
extraordinary expansion and diversification in the last couple of decades. A great proportion …

QM/MM methods for biological systems

HM Senn, W Thiel - Atomistic approaches in modern biology: from …, 2007 - Springer
Thirty years after the seminal contribution by Warshel and Levitt, we review the state of the
art of combined quantum-mechanics/molecular-mechanics (QM/MM) methods, with a focus …

Numerical methods for electronic structure calculations of materials

Y Saad, JR Chelikowsky, SM Shontz - SIAM review, 2010 - SIAM
The goal of this article is to give an overview of numerical problems encountered when
determining the electronic structure of materials and the rich variety of techniques used to …

Best practices on QM/MM simulations of biological systems

CM Clemente, L Capece, MA Martí - Journal of Chemical …, 2023 - ACS Publications
During the second half of the 20th century, following structural biology hallmark works on
DNA and proteins, biochemists shifted their questions from “what does this molecule look …