The gene balance hypothesis: from classical genetics to modern genomics

JA Birchler, RA Veitia - The Plant Cell, 2007 - academic.oup.com
The concept of genetic balance traces back to the early days of genetics. Additions or
subtractions of single chromosomes to the karyotype (aneuploidy) produced greater impacts …

Evolution of protein-coding genes in Drosophila

AM Larracuente, TB Sackton, AJ Greenberg, A Wong… - Trends in Genetics, 2008 - cell.com
Several contributing factors have been implicated in evolutionary rate heterogeneity among
proteins, but their evolutionary mechanisms remain poorly characterized. The recently …

Rubisco is evolving for improved catalytic efficiency and CO2 assimilation in plants

JW Bouvier, DM Emms, S Kelly - Proceedings of the National Academy of …, 2024 - pnas.org
Rubisco is the primary entry point for carbon into the biosphere. However, rubisco is widely
regarded as inefficient leading many to question whether the enzyme can adapt to become …

The genetic landscape of a cell

M Costanzo, A Baryshnikova, J Bellay, Y Kim… - science, 2010 - science.org
A genome-scale genetic interaction map was constructed by examining 5.4 million gene-
gene pairs for synthetic genetic interactions, generating quantitative genetic interaction …

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

NJ Krogan, G Cagney, H Yu, G Zhong, X Guo… - Nature, 2006 - nature.com
Identification of protein–protein interactions often provides insight into protein function, and
many cellular processes are performed by stable protein complexes. We used tandem …

Interaction network containing conserved and essential protein complexes in Escherichia coli

G Butland, JM Peregrín-Alvarez, J Li, W Yang, X Yang… - Nature, 2005 - nature.com
Proteins often function as components of multi-subunit complexes. Despite its long history as
a model organism, no large-scale analysis of protein complexes in Escherichia coli has yet …

Characterization of the proteome, diseases and evolution of the human postsynaptic density

À Bayés, LN Van De Lagemaat, MO Collins… - Nature …, 2011 - nature.com
We isolated the postsynaptic density from human neocortex (hPSD) and identified 1,461
proteins. hPSD mutations cause 133 neurological and psychiatric diseases and were …

Systematic exploration of essential yeast gene function with temperature-sensitive mutants

Z Li, FJ Vizeacoumar, S Bahr, J Li, J Warringer… - Nature …, 2011 - nature.com
Conditional temperature-sensitive (ts) mutations are valuable reagents for studying essential
genes in the yeast Saccharomyces cerevisiae. We constructed 787 ts strains, covering 497 …

What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?

D Ekman, S Light, ÅK Björklund, A Elofsson - Genome biology, 2006 - Springer
Background Most proteins interact with only a few other proteins while a small number of
proteins (hubs) have many interaction partners. Hub proteins and non-hub proteins differ in …

Structure, function, and evolution of transient and obligate protein–protein interactions

J Mintseris, Z Weng - Proceedings of the National Academy of Sciences, 2005 - pnas.org
Recent analyses of high-throughput protein interaction data coupled with large-scale
investigations of evolutionary properties of interaction networks have left some unanswered …