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New advances in cross-linking mass spectrometry toward structural systems biology
Elucidating protein–protein interaction (PPI) networks and their structural features within
cells is central to understanding fundamental biology and associations of cell phenotypes …
cells is central to understanding fundamental biology and associations of cell phenotypes …
Chemical cross-linking and mass spectrometry enabled systems-level structural biology
Structural information on protein–protein interactions (PPIs) is essential for improved
understanding of regulatory interactome networks that confer various physiological and …
understanding of regulatory interactome networks that confer various physiological and …
Directed Evolution of Protoglobin Optimizes the Enzyme Electric Field
To unravel why computational design fails in creating viable enzymes, while directed
evolution (DE) succeeds, our research delves into the laboratory evolution of protoglobin …
evolution (DE) succeeds, our research delves into the laboratory evolution of protoglobin …
AlphaFold two years on: Validation and impact
O Kovalevskiy, J Mateos-Garcia… - Proceedings of the …, 2024 - pnas.org
Two years on from the initial release of AlphaFold, we have seen its widespread adoption as
a structure prediction tool. Here, we discuss some of the latest work based on AlphaFold …
a structure prediction tool. Here, we discuss some of the latest work based on AlphaFold …
Modeling flexible protein structure with AlphaFold2 and crosslinking mass spectrometry
K Manalastas-Cantos, KR Adoni, M Pfeifer… - Molecular & Cellular …, 2024 - mcponline.org
We propose a pipeline that combines AlphaFold2 (AF2) and crosslinking mass spectrometry
(XL-MS) to model the structure of proteins with multiple conformations. The pipeline consists …
(XL-MS) to model the structure of proteins with multiple conformations. The pipeline consists …
Cell fixation improves performance of in situ crosslinking mass spectrometry while preserving cellular ultrastructure
ARM Michael, BC Amaral, KL Ball, KH Eiriksson… - Nature …, 2024 - nature.com
Crosslinking mass spectrometry (XL-MS) has the potential to map the interactome of the cell
with high resolution and depth of coverage. However, current in vivo XL-MS methods are …
with high resolution and depth of coverage. However, current in vivo XL-MS methods are …
The potential of cross-linking mass spectrometry in the development of protein–protein interaction modulators
Cross-linking mass spectrometry (XL-MS) can provide a wealth of information on
endogenous protein–protein interaction (PPI) networks and protein binding interfaces …
endogenous protein–protein interaction (PPI) networks and protein binding interfaces …
[HTML][HTML] Structural biology in cellulo: Minding the gap between conceptualization and realization
Recent technological advances have deepened our perception of cellular structure.
However, most structural data doesn't originate from intact cells, limiting our understanding …
However, most structural data doesn't originate from intact cells, limiting our understanding …
DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples
Protein–protein interactions (PPIs) are fundamental to understanding biological systems as
protein complexes are the active molecular modules critical for carrying out cellular …
protein complexes are the active molecular modules critical for carrying out cellular …
Decoding Protein Dynamics in Cells Using Chemical Cross‐Linking and Hierarchical Analysis
B Zhang, Z Gong, L Zhao, Y An, H Gao… - Angewandte Chemie …, 2023 - Wiley Online Library
Protein dynamics play a crucial role in their diverse functions. The intracellular environment
significantly influences protein dynamics, particularly for intrinsically disordered proteins …
significantly influences protein dynamics, particularly for intrinsically disordered proteins …