The Signaling Pathways Project, an integrated 'omics knowledgebase for mammalian cellular signaling pathways

SA Ochsner, D Abraham, K Martin, W Ding, A McOwiti… - Scientific data, 2019 - nature.com
Mining of integrated public transcriptomic and ChIP-Seq (cistromic) datasets can illuminate
functions of mammalian cellular signaling pathways not yet explored in the research …

RummaGEO: automatic mining of human and mouse gene sets from GEO

GB Marino, DJB Clarke, A Lachmann, EZ Deng… - Patterns, 2024 - cell.com
Summary The Gene Expression Omnibus (GEO) has millions of samples from thousands of
studies. While users of GEO can search the metadata describing studies, there is a need for …

Integrated transcriptomics and metabolomics reveal signatures of lipid metabolism dysregulation in HepaRG liver cells exposed to PCB 126

R Mesnage, M Biserni, S Balu, C Frainay, N Poupin… - Archives of …, 2018 - Springer
Chemical pollutant exposure is a risk factor contributing to the growing epidemic of non-
alcoholic fatty liver disease (NAFLD) affecting human populations that consume a western …

Signatures of cell death and proliferation in perturbation transcriptomics data—from confounding factor to effective prediction

B Szalai, V Subramanian, CH Holland… - Nucleic Acids …, 2019 - academic.oup.com
Transcriptional perturbation signatures are valuable data sources for functional genomics.
Linking perturbation signatures to screenings opens the possibility to model cellular …

Transcriptomic data mining and repurposing for computational drug discovery

Y Wang, J Yella, AG Jegga - Computational Methods for Drug …, 2019 - Springer
Conventional drug discovery in general is costly and time-consuming with extremely low
success and relatively high attrition rates. The disparity between high cost of drug discovery …

Repositioning of a novel GABA-B receptor agonist, AZD3355 (Lesogaberan), for the treatment of non-alcoholic steatohepatitis

D Bhattacharya, C Becker, B Readhead, N Goossens… - Scientific reports, 2021 - nature.com
Non-alcoholic steatohepatitis (NASH) is a rising health challenge, with no approved drugs.
We used a computational drug repositioning strategy to uncover a novel therapy for NASH …

[PDF][PDF] Συστημική μοντελοποίηση muti-omics δεδομένων για εύρεση μηχανισμών ανθρώπινων ασθενειών

ΔΣ Ζαρείφη - 2022 - dspace.lib.ntua.gr
The omics area that, was developed the past decades, has offered a basis for the
development of systems biology technologies that include the integration of several omics …