[HTML][HTML] Exploring new horizons: Empowering computer-assisted drug design with few-shot learning

S Silva-Mendonça, AR de Sousa Vitória… - Artificial Intelligence in …, 2023 - Elsevier
Computational approaches have revolutionized the field of drug discovery, collectively
known as Computer-Assisted Drug Design (CADD). Advancements in computing power …

TCMBank: bridges between the largest herbal medicines, chemical ingredients, target proteins, and associated diseases with intelligence text mining

Q Lv, G Chen, H He, Z Yang, L Zhao, HY Chen… - Chemical …, 2023 - pubs.rsc.org
Traditional Chinese Medicine (TCM) has long been viewed as a precious source of modern
drug discovery. AI-assisted drug discovery (AIDD) has been investigated extensively …

Exploring the role of topological descriptors to predict physicochemical properties of anti-HIV drugs by using supervised machine learning algorithms

W Ahmed, S Zaman, E Asif, K Ali, EE Mahmoud… - BMC chemistry, 2024 - Springer
In order to explore the role of topological indices for predicting physio-chemical properties of
anti-HIV drugs, this research uses python program-based algorithms to compute topological …

HSTrans: Homogeneous substructures transformer for predicting frequencies of drug-side effects

K Xu, M Wang, X Zou, J Liu, A Wei, J Chen, C Tang - Neural Networks, 2025 - Elsevier
Identifying the frequencies of drug-side effects is crucial for assessing drug risk-benefit.
However, accurately determining these frequencies remains challenging due to the …

Meta-molnet: A cross-domain benchmark for few examples drug discovery

Q Lv, G Chen, Z Yang, W Zhong… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Predicting the pharmacological activity, toxicity, and pharmacokinetic properties of
molecules is a central task in drug discovery. Existing machine learning methods are …

Multi-scale multi-object semi-supervised consistency learning for ultrasound image segmentation

S Guo, Z Liu, Z Yang, CH Lee, Q Lv, L Shen - Neural Networks, 2025 - Elsevier
Manual annotation of ultrasound images relies on expert knowledge and requires significant
time and financial resources. Semi-supervised learning (SSL) exploits large amounts of …

Unified Knowledge-Guided Molecular Graph Encoder with multimodal fusion and multi-task learning

M Chen, X Gong, S Pan, J Wu, F Lin, B Du, W Hu - Neural Networks, 2025 - Elsevier
The remarkable success of Graph Neural Networks underscores their formidable capacity to
assimilate multimodal inputs, markedly enhancing performance across a broad spectrum of …

[HTML][HTML] Towards complex dynamic physics system simulation with graph neural ordinary equations

G Shi, D Zhang, M **, S Pan, SY Philip - Neural Networks, 2024 - Elsevier
The great learning ability of deep learning facilitates us to comprehend the real physical
world, making learning to simulate complicated particle systems a promising endeavour …

Emerging opportunities of using large language models for translation between drug molecules and indications

D Oniani, J Hilsman, C Zang, J Wang, L Cai… - Scientific Reports, 2024 - nature.com
A drug molecule is a substance that changes an organism's mental or physical state. Every
approved drug has an indication, which refers to the therapeutic use of that drug for treating …

Learning personalized drug features and differentiated drug-pair interaction information for drug–drug interaction prediction

L Meng, Y He, C Sun, L Huang, T Hu, F Yang - Neural Networks, 2025 - Elsevier
Multi-drug combination therapies are increasingly used for complex diseases but carry risks
of harmful drug interactions. Effective drug–drug interaction prediction (DDIP) is essential for …