Enhancing essential grains yield for sustainable food security and bio-safe agriculture through latest innovative approaches

G Albahri, AA Alyamani, A Badran, A Hijazi, M Nasser… - Agronomy, 2023 - mdpi.com
A key concern in agriculture is how to feed the expanding population and safeguard the
environment from the ill effects of climate change. To feed a growing global population, food …

Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

De novo genome assembly and analyses of 12 founder inbred lines provide insights into maize heterosis

B Wang, M Hou, J Shi, L Ku, W Song, C Li, Q Ning… - Nature Genetics, 2023 - nature.com
Hybrid maize displays superior heterosis and contributes over 30% of total worldwide cereal
production. However, the molecular mechanisms of heterosis remain obscure. Here we …

Maize smart-canopy architecture enhances yield at high densities

J Tian, C Wang, F Chen, W Qin, H Yang, S Zhao, J **a… - Nature, 2024 - nature.com
Increasing planting density is a key strategy for enhancing maize yields,–. An ideotype for
dense planting requires a 'smart canopy'with leaf angles at different canopy layers …

Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis

Z Gu, J Gong, Z Zhu, Z Li, Q Feng, C Wang, Y Zhao… - Nature Genetics, 2023 - nature.com
Exploitation of crop heterosis is crucial for increasing global agriculture production.
However, the quantitative genomic analysis of heterosis was lacking, and there is currently …

A pan-grass transcriptome reveals patterns of cellular divergence in crops

B Guillotin, R Rahni, M Passalacqua, MA Mohammed… - Nature, 2023 - nature.com
Different plant species within the grasses were parallel targets of domestication, giving rise
to crops with distinct evolutionary histories and traits. Key traits that distinguish these species …

Genome-wide dissection of changes in maize root system architecture during modern breeding

W Ren, L Zhao, J Liang, L Wang, L Chen, P Li, Z Liu… - Nature Plants, 2022 - nature.com
Appropriate root system architecture (RSA) can improve maize yields in densely planted
fields, but little is known about its genetic basis in maize. Here we performed root …

A cis-regulatory atlas in maize at single-cell resolution

AP Marand, Z Chen, A Gallavotti, RJ Schmitz - Cell, 2021 - cell.com
Summary cis-regulatory elements (CREs) encode the genomic blueprints of spatiotemporal
gene expression programs enabling highly specialized cell functions. Using single-cell …

Genomic variation in weedy and cultivated broomcorn millet accessions uncovers the genetic architecture of agronomic traits

Q Lu, H Zhao, Z Zhang, Y Bai, H Zhao, G Liu, M Liu… - Nature Genetics, 2024 - nature.com
Large-scale genomic variations are fundamental resources for crop genetics and breeding.
Here we sequenced 1,904 genomes of broomcorn millet to an average of 40× sequencing …

PANNZER—a practical tool for protein function prediction

P Törönen, L Holm - Protein Science, 2022 - Wiley Online Library
The facility of next‐generation sequencing has led to an explosion of gene catalogs for
novel genomes, transcriptomes and metagenomes, which are functionally uncharacterized …