Advances in natural language processing
Natural language processing employs computational techniques for the purpose of learning,
understanding, and producing human language content. Early computational approaches to …
understanding, and producing human language content. Early computational approaches to …
A survey on clinical natural language processing in the United Kingdom from 2007 to 2022
Much of the knowledge and information needed for enabling high-quality clinical research is
stored in free-text format. Natural language processing (NLP) has been used to extract …
stored in free-text format. Natural language processing (NLP) has been used to extract …
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
Cellular life depends on a complex web of functional associations between biomolecules.
Among these associations, protein–protein interactions are particularly important due to their …
Among these associations, protein–protein interactions are particularly important due to their …
COVID-19 literature knowledge graph construction and drug repurposing report generation
To combat COVID-19, both clinicians and scientists need to digest vast amounts of relevant
biomedical knowledge in scientific literature to understand the disease mechanism and …
biomedical knowledge in scientific literature to understand the disease mechanism and …
Community challenges in biomedical text mining over 10 years: success, failure and the future
CC Huang, Z Lu - Briefings in bioinformatics, 2016 - academic.oup.com
One effective way to improve the state of the art is through competitions. Following the
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
GNormPlus: an integrative approach for tagging genes, gene families, and protein domains
The automatic recognition of gene names and their associated database identifiers from
biomedical text has been widely studied in recent years, as these tasks play an important …
biomedical text has been widely studied in recent years, as these tasks play an important …
Gene duplicability of core genes is highly consistent across all angiosperms
Gene duplication is an important mechanism for adding to genomic novelty. Hence, which
genes undergo duplication and are preserved following duplication is an important question …
genes undergo duplication and are preserved following duplication is an important question …
Landscape and flux theory of non-equilibrium dynamical systems with application to biology
J Wang - Advances in Physics, 2015 - Taylor & Francis
We present a review of the recently developed landscape and flux theory for non-equilibrium
dynamical systems. We point out that the global natures of the associated dynamics for non …
dynamical systems. We point out that the global natures of the associated dynamics for non …
Automated assembly of molecular mechanisms at scale from text mining and curated databases
The analysis of omic data depends on machine‐readable information about protein
interactions, modifications, and activities as found in protein interaction networks, databases …
interactions, modifications, and activities as found in protein interaction networks, databases …
What is stress? Dose-response effects in commonly used in vitro stress assays
In vitro stress assays are commonly used to study the responses of plants to abiotic stress
and to assess stress tolerance. A literature review reveals that most studies use very high …
and to assess stress tolerance. A literature review reveals that most studies use very high …