Genetics of mitochondrial diseases: Identifying mutations to help diagnosis
SL Stenton, H Prokisch - EBioMedicine, 2020 - thelancet.com
Mitochondrial diseases are amongst the most genetically and phenotypically diverse groups
of inherited diseases. The vast phenotypic overlap with other disease entities together with …
of inherited diseases. The vast phenotypic overlap with other disease entities together with …
SpliceAI-visual: a free online tool to improve SpliceAI splicing variant interpretation
JM de Sainte Agathe, M Filser, B Isidor, T Besnard… - Human Genomics, 2023 - Springer
SpliceAI is an open-source deep learning splicing prediction algorithm that has
demonstrated in the past few years its high ability to predict splicing defects caused by DNA …
demonstrated in the past few years its high ability to predict splicing defects caused by DNA …
Recommendations for clinical interpretation of variants found in non-coding regions of the genome
Background The majority of clinical genetic testing focuses almost exclusively on regions of
the genome that directly encode proteins. The important role of variants in non-coding …
the genome that directly encode proteins. The important role of variants in non-coding …
Transcriptome-directed analysis for Mendelian disease diagnosis overcomes limitations of conventional genomic testing
DR Murdock, H Dai, LC Burrage… - The Journal of …, 2021 - Am Soc Clin Investig
BACKGROUND Transcriptome sequencing (RNA-seq) improves diagnostic rates in
individuals with suspected Mendelian conditions to varying degrees, primarily by directing …
individuals with suspected Mendelian conditions to varying degrees, primarily by directing …
[HTML][HTML] Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants
AM Bournazos, LG Riley, S Bommireddipalli, L Ades… - Genetics in …, 2022 - Elsevier
Purpose Genetic variants causing aberrant premessenger RNA splicing are increasingly
being recognized as causal variants in genetic disorders. In this study, we devise …
being recognized as causal variants in genetic disorders. In this study, we devise …
Splicing in the diagnosis of rare disease: advances and challenges
Mutations which affect splicing are significant contributors to rare disease, but are frequently
overlooked by diagnostic sequencing pipelines. Greater ascertainment of pathogenic …
overlooked by diagnostic sequencing pipelines. Greater ascertainment of pathogenic …
Benchmarking deep learning splice prediction tools using functional splice assays
Hereditary disorders are frequently caused by genetic variants that affect pre‐messenger
RNA splicing. Though genetic variants in the canonical splice motifs are almost always …
RNA splicing. Though genetic variants in the canonical splice motifs are almost always …
Diagnostic outcomes of concurrent DNA and RNA sequencing in individuals undergoing hereditary cancer testing
C Horton, L Hoang, H Zimmermann, C Young… - JAMA …, 2024 - jamanetwork.com
Importance Personalized surveillance, prophylaxis, and cancer treatment options for
individuals with hereditary cancer predisposition are informed by results of germline genetic …
individuals with hereditary cancer predisposition are informed by results of germline genetic …
Trio RNA sequencing in a cohort of medically complex children
AR Deshwar, KE Yuki, H Hou, Y Liang, T Khan… - The American Journal of …, 2023 - cell.com
Genome sequencing (GS) is a powerful test for the diagnosis of rare genetic disorders.
Although GS can enumerate most non-coding variation, determining which non-coding …
Although GS can enumerate most non-coding variation, determining which non-coding …
[HTML][HTML] SpliceVarDB: a comprehensive database of experimentally validated human splicing variants
Variants that alter gene splicing are estimated to comprise up to a third of all disease-
causing variants, yet they are hard to predict from DNA sequencing data alone. To overcome …
causing variants, yet they are hard to predict from DNA sequencing data alone. To overcome …