Genetics of mitochondrial diseases: Identifying mutations to help diagnosis

SL Stenton, H Prokisch - EBioMedicine, 2020 - thelancet.com
Mitochondrial diseases are amongst the most genetically and phenotypically diverse groups
of inherited diseases. The vast phenotypic overlap with other disease entities together with …

SpliceAI-visual: a free online tool to improve SpliceAI splicing variant interpretation

JM de Sainte Agathe, M Filser, B Isidor, T Besnard… - Human Genomics, 2023 - Springer
SpliceAI is an open-source deep learning splicing prediction algorithm that has
demonstrated in the past few years its high ability to predict splicing defects caused by DNA …

Recommendations for clinical interpretation of variants found in non-coding regions of the genome

JM Ellingford, JW Ahn, RD Bagnall, D Baralle… - Genome medicine, 2022 - Springer
Background The majority of clinical genetic testing focuses almost exclusively on regions of
the genome that directly encode proteins. The important role of variants in non-coding …

Transcriptome-directed analysis for Mendelian disease diagnosis overcomes limitations of conventional genomic testing

DR Murdock, H Dai, LC Burrage… - The Journal of …, 2021 - Am Soc Clin Investig
BACKGROUND Transcriptome sequencing (RNA-seq) improves diagnostic rates in
individuals with suspected Mendelian conditions to varying degrees, primarily by directing …

[HTML][HTML] Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants

AM Bournazos, LG Riley, S Bommireddipalli, L Ades… - Genetics in …, 2022 - Elsevier
Purpose Genetic variants causing aberrant premessenger RNA splicing are increasingly
being recognized as causal variants in genetic disorders. In this study, we devise …

Splicing in the diagnosis of rare disease: advances and challenges

J Lord, D Baralle - Frontiers in genetics, 2021 - frontiersin.org
Mutations which affect splicing are significant contributors to rare disease, but are frequently
overlooked by diagnostic sequencing pipelines. Greater ascertainment of pathogenic …

Benchmarking deep learning splice prediction tools using functional splice assays

TV Riepe, M Khan, S Roosing, FPM Cremers… - Human …, 2021 - Wiley Online Library
Hereditary disorders are frequently caused by genetic variants that affect pre‐messenger
RNA splicing. Though genetic variants in the canonical splice motifs are almost always …

Diagnostic outcomes of concurrent DNA and RNA sequencing in individuals undergoing hereditary cancer testing

C Horton, L Hoang, H Zimmermann, C Young… - JAMA …, 2024 - jamanetwork.com
Importance Personalized surveillance, prophylaxis, and cancer treatment options for
individuals with hereditary cancer predisposition are informed by results of germline genetic …

Trio RNA sequencing in a cohort of medically complex children

AR Deshwar, KE Yuki, H Hou, Y Liang, T Khan… - The American Journal of …, 2023 - cell.com
Genome sequencing (GS) is a powerful test for the diagnosis of rare genetic disorders.
Although GS can enumerate most non-coding variation, determining which non-coding …

[HTML][HTML] SpliceVarDB: a comprehensive database of experimentally validated human splicing variants

PJ Sullivan, JMW Quinn, W Wu, M Pinese… - The American Journal of …, 2024 - cell.com
Variants that alter gene splicing are estimated to comprise up to a third of all disease-
causing variants, yet they are hard to predict from DNA sequencing data alone. To overcome …