Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks

F Emmert-Streib, M Dehmer… - Frontiers in cell and …, 2014 - frontiersin.org
In recent years gene regulatory networks (GRNs) have attracted a lot of interest and many
methods have been introduced for their statistical inference from gene expression data …

A review on the computational approaches for gene regulatory network construction

LE Chai, SK Loh, ST Low, MS Mohamad… - Computers in biology …, 2014 - Elsevier
Many biological research areas such as drug design require gene regulatory networks to
provide clear insight and understanding of the cellular process in living cells. This is …

A comprehensive overview and critical evaluation of gene regulatory network inference technologies

M Zhao, W He, J Tang, Q Zou… - Briefings in bioinformatics, 2021 - academic.oup.com
Gene regulatory network (GRN) is the important mechanism of maintaining life process,
controlling biochemical reaction and regulating compound level, which plays an important …

Inference of gene regulatory network based on local Bayesian networks

F Liu, SW Zhang, WF Guo, ZG Wei… - PLoS computational …, 2016 - journals.plos.org
The inference of gene regulatory networks (GRNs) from expression data can mine the direct
regulations among genes and gain deep insights into biological processes at a network …

A review on omics-based biomarkers discovery for Alzheimer's disease from the bioinformatics perspectives: statistical approach vs machine learning approach

MS Tan, PL Cheah, AV Chin, LM Looi… - Computers in biology and …, 2021 - Elsevier
Alzheimer's Disease (AD) is a neurodegenerative disease that affects cognition and is the
most common cause of dementia in the elderly. As the number of elderly individuals …

Big data analytics in bioinformatics: A machine learning perspective

H Kashyap, HA Ahmed, N Hoque, S Roy… - arxiv preprint arxiv …, 2015 - arxiv.org
Bioinformatics research is characterized by voluminous and incremental datasets and
complex data analytics methods. The machine learning methods used in bioinformatics are …

[HTML][HTML] GRouNdGAN: GRN-guided simulation of single-cell RNA-seq data using causal generative adversarial networks

Y Zinati, A Takiddeen, A Emad - Nature Communications, 2024 - nature.com
We introduce GRouNdGAN, a gene regulatory network (GRN)-guided reference-based
causal implicit generative model for simulating single-cell RNA-seq data, in silico …

Supervised, semi-supervised and unsupervised inference of gene regulatory networks

SR Maetschke, PB Madhamshettiwar… - Briefings in …, 2014 - academic.oup.com
Inference of gene regulatory network from expression data is a challenging task. Many
methods have been developed to this purpose but a comprehensive evaluation that covers …