Map** protein− protein interactions in solution by NMR spectroscopy

ERP Zuiderweg - Biochemistry, 2002 - ACS Publications
NMR is very well suited to the study of especially weak protein− protein interactions, as no
crystallization is required. The available NMR methods to this end are reviewed and …

FROM FOLDING THEORIES TO FOLDING PROTEINS: A Review and Assessment of Simulation Studies of Protein Folding and Unfolding

JE Shea, CL Brooks III - Annual review of physical chemistry, 2001 - annualreviews.org
▪ Abstract Beginning with simplified lattice and continuum “minimalist” models and
progressing to detailed atomic models, simulation studies have augmented and directed …

Origins of life: The Protein Folding Problem all over again?

CD Kocher, KA Dill - Proceedings of the National Academy of Sciences, 2024 - pnas.org
How did specific useful protein sequences arise from simpler molecules at the origin of life?
This seemingly needle-in-a-haystack problem has remarkably close resemblance to the old …

Extant fold-switching proteins are widespread

LL Porter, LL Looger - … of the National Academy of Sciences, 2018 - National Acad Sciences
A central tenet of biology is that globular proteins have a unique 3D structure under
physiological conditions. Recent work has challenged this notion by demonstrating that …

Protein analysis by hydrogen exchange mass spectrometry

AN Hoofnagle, KA Resing… - Annual review of …, 2003 - annualreviews.org
▪ Abstract Mass spectrometry has provided a powerful method for monitoring hydrogen
exchange of protein backbone amides with deuterium from solvent. In comparison to …

Protein unfolding: rigidity lost

AJ Rader, BM Hespenheide… - Proceedings of the …, 2002 - National Acad Sciences
We relate the unfolding of a protein to its loss of structural stability or rigidity. Rigidity and
flexibility are well defined concepts in mathematics and physics, with a body of theorems …

Map** the core of the β2-microglobulin amyloid fibril by H/D exchange

M Hoshino, H Katou, Y Hagihara, K Hasegawa… - Nature structural …, 2002 - nature.com
Despite numerous efforts, the lack of detailed structural information on amyloid fibrils has
hindered clarification of the mechanism of their formation. Here, we describe a novel …

Using motion planning to study protein folding pathways

G Song, NM Amato - Proceedings of the fifth annual international …, 2001 - dl.acm.org
We present a framework for studying protein folding pathways and potential landscapes
which is based on techniques recently developed in the robotics motion planning …

Functional and regulatory roles of fold-switching proteins

AK Kim, LL Porter - Structure, 2021 - cell.com
Fold-switching proteins respond to cellular stimuli by remodeling their secondary structures
and changing their functions. Whereas several previous reviews have focused on various …

Hydrogen exchange in peptides and proteins using NMR spectroscopy

CE Dempsey - Progress in Nuclear Magnetic Resonance …, 2001 - Elsevier
Analysis of the kinetics of hydrogen exchange in biological macromolecules is a powerful
method for studying both their structural and dynamic properties. This arises from our …