Classes of explicit phylogenetic networks and their biological and mathematical significance
The evolutionary relationships among organisms have traditionally been represented using
rooted phylogenetic trees. However, due to reticulate processes such as hybridization or …
rooted phylogenetic trees. However, due to reticulate processes such as hybridization or …
Tree balance indices: a comprehensive survey
Tree balance plays an important role in phylogenetics and other research areas, which is
why several indices to measure tree balance have been introduced over the years …
why several indices to measure tree balance have been introduced over the years …
Archaeology and the origins of human cumulative culture: A case study from the earliest Oldowan at Gona, Ethiopia
The capacity of Homo sapiens for the intergenerational accumulation of complex
technologies, practices, and beliefs is central to contemporary accounts of human …
technologies, practices, and beliefs is central to contemporary accounts of human …
Advances in computational methods for phylogenetic networks in the presence of hybridization
Phylogenetic networks extend phylogenetic trees to allow for modeling reticulate
evolutionary processes such as hybridization. They take the shape of a rooted, directed …
evolutionary processes such as hybridization. They take the shape of a rooted, directed …
NANUQ: a method for inferring species networks from gene trees under the coalescent model
Species networks generalize the notion of species trees to allow for hybridization or other
lateral gene transfer. Under the network multispecies coalescent model, individual gene …
lateral gene transfer. Under the network multispecies coalescent model, individual gene …
Total positivity in multivariate extremes
Total positivity in multivariate extremes Page 1 The Annals of Statistics 2023, Vol. 51, No. 3,
962–1004 https://doi.org/10.1214/23-AOS2272 © Institute of Mathematical Statistics, 2023 …
962–1004 https://doi.org/10.1214/23-AOS2272 © Institute of Mathematical Statistics, 2023 …
Learning and Testing Latent-Tree Ising Models Efficiently
We provide time-and sample-efficient algorithms for learning and testing latent-tree Ising
models, ie Ising models that may only be observed at their leaf nodes. On the learning side …
models, ie Ising models that may only be observed at their leaf nodes. On the learning side …
A zero-agnostic model for copy number evolution in cancer
Motivation New low-coverage single-cell DNA sequencing technologies enable the
measurement of copy number profiles from thousands of individual cells within tumors. From …
measurement of copy number profiles from thousands of individual cells within tumors. From …
[HTML][HTML] Counting and enumerating tree-child networks and their subclasses
Galled trees are studied as a recombination model in population genetics. This class of
phylogenetic networks is generalized into tree-child and galled network classes by relaxing …
phylogenetic networks is generalized into tree-child and galled network classes by relaxing …
Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes
Phylogenetic networks can represent evolutionary events that cannot be described by
phylogenetic trees. These networks are able to incorporate reticulate evolutionary events …
phylogenetic trees. These networks are able to incorporate reticulate evolutionary events …