Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors

AV Anzalone, LW Koblan, DR Liu - Nature biotechnology, 2020 - nature.com
The development of new CRISPR–Cas genome editing tools continues to drive major
advances in the life sciences. Four classes of CRISPR–Cas-derived genome editing agents …

CRISPR technologies for genome, epigenome and transcriptome editing

L Villiger, J Joung, L Koblan, J Weissman… - … Reviews Molecular Cell …, 2024 - nature.com
Our ability to edit genomes lags behind our capacity to sequence them, but the growing
understanding of CRISPR biology and its application to genome, epigenome and …

Programmable base editing of A• T to G• C in genomic DNA without DNA cleavage

NM Gaudelli, AC Komor, HA Rees, MS Packer… - Nature, 2017 - nature.com
The spontaneous deamination of cytosine is a major source of transitions from C• G to T• A
base pairs, which account for half of known pathogenic point mutations in humans. The …

Base editing: precision chemistry on the genome and transcriptome of living cells

HA Rees, DR Liu - Nature reviews genetics, 2018 - nature.com
RNA-guided programmable nucleases from CRISPR systems generate precise breaks in
DNA or RNA at specified positions. In cells, this activity can lead to changes in DNA …

Adenine transversion editors enable precise, efficient A• T-to-C• G base editing in mammalian cells and embryos

L Chen, M Hong, C Luan, H Gao, G Ru, X Guo… - Nature …, 2024 - nature.com
Base editors have substantial promise in basic research and as therapeutic agents for the
correction of pathogenic mutations. The development of adenine transversion editors has …

Base excision repair

HE Krokan, M Bjørås - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Base excision repair (BER) corrects DNA damage from oxidation, deamination and
alkylation. Such base lesions cause little distortion to the DNA helix structure. BER is …

Determinants of base editing outcomes from target library analysis and machine learning

M Arbab, MW Shen, B Mok, C Wilson, Ż Matuszek… - Cell, 2020 - cell.com
Although base editors are widely used to install targeted point mutations, the factors that
determine base editing outcomes are not well understood. We characterized sequence …

Breakage of cytoplasmic chromosomes by pathological DNA base excision repair

S Tang, E Stokasimov, Y Cui, D Pellman - Nature, 2022 - nature.com
Chromothripsis is a catastrophic mutational process that promotes tumorigenesis and
causes congenital disease,,–. Chromothripsis originates from aberrations of nuclei called …

Protein tolerance to random amino acid change

HH Guo, J Choe, LA Loeb - Proceedings of the National Academy of …, 2004 - pnas.org
Mutagenesis of protein-encoding sequences occurs ubiquitously; it enables evolution,
accumulates during aging, and is associated with disease. Many biotechnological methods …

Alkylation damage in DNA and RNA—repair mechanisms and medical significance

F Drabløs, E Feyzi, PA Aas, CB Vaagbø, B Kavli… - DNA repair, 2004 - Elsevier
Alkylation lesions in DNA and RNA result from endogenous compounds, environmental
agents and alkylating drugs. Simple methylating agents, eg methylnitrosourea, tobacco …