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Development and benchmarking of open force field 2.0. 0: The Sage small molecule force field
We introduce the Open Force Field (OpenFF) 2.0. 0 small molecule force field for drug-like
molecules, code-named Sage, which builds upon our previous iteration, Parsley. OpenFF …
molecules, code-named Sage, which builds upon our previous iteration, Parsley. OpenFF …
Integration of experimental data and use of automated fitting methods in develo** protein force fields
MD Polêto, JA Lemkul - Communications chemistry, 2022 - nature.com
The development of accurate protein force fields has been the cornerstone of molecular
simulations for the past 50 years. During this period, many lessons have been learned …
simulations for the past 50 years. During this period, many lessons have been learned …
Machine-learned molecular mechanics force fields from large-scale quantum chemical data
The development of reliable and extensible molecular mechanics (MM) force fields—fast,
empirical models characterizing the potential energy surface of molecular systems—is …
empirical models characterizing the potential energy surface of molecular systems—is …
Software infrastructure for next-generation QM/MM− ΔMLP force fields
We present software infrastructure for the design and testing of new quantum
mechanical/molecular mechanical and machine-learning potential (QM/MM− ΔMLP) force …
mechanical/molecular mechanical and machine-learning potential (QM/MM− ΔMLP) force …
The open force field initiative: Open software and open science for molecular modeling
Force fields are a key component of physics-based molecular modeling, describing the
energies and forces in a molecular system as a function of the positions of the atoms and …
energies and forces in a molecular system as a function of the positions of the atoms and …
Open force field evaluator: An automated, efficient, and scalable framework for the estimation of physical properties from molecular simulation
Develo** accurate classical force field representations of molecules is key to realizing the
full potential of molecular simulations, both as a powerful route to gaining fundamental …
full potential of molecular simulations, both as a powerful route to gaining fundamental …
Development and comprehensive benchmark of a high-quality amber-consistent small molecule force field with broad chemical space coverage for molecular …
B Xue, Q Yang, Q Zhang, X Wan, D Fang… - Journal of Chemical …, 2023 - ACS Publications
Biomolecular simulations have become an essential tool in contemporary drug discovery,
and molecular mechanics force fields (FFs) constitute its cornerstone. Develo** a high …
and molecular mechanics force fields (FFs) constitute its cornerstone. Develo** a high …
A transferable double exponential potential for condensed phase simulations of small molecules
The Lennard–Jones potential is the most widely-used function for the description of non-
bonded interactions in transferable force fields for the condensed phase. This is not because …
bonded interactions in transferable force fields for the condensed phase. This is not because …
Nonbonded Force Field Parameters from MBIS Partitioning of the Molecular Electron Density Improve Thermophysical Properties Prediction of Organic Liquids
J Pulido, L Macaya… - Journal of Chemical & …, 2024 - ACS Publications
The accuracy of predicting thermophysical properties through molecular dynamics
simulations is constrained by the precision of the models used to describe molecular …
simulations is constrained by the precision of the models used to describe molecular …
Exploration and validation of force field design protocols through QM-to-MM map**
The scale of the parameter optimisation problem in traditional molecular mechanics force
field construction means that design of a new force field is a long process, and sub-optimal …
field construction means that design of a new force field is a long process, and sub-optimal …