PREDICT: a method for inferring novel drug indications with application to personalized medicine

A Gottlieb, GY Stein, E Ruppin… - Molecular systems biology, 2011 - embopress.org
Inferring potential drug indications, for either novel or approved drugs, is a key step in drug
development. Previous computational methods in this domain have focused on either drug …

Answering clinical questions with knowledge-based and statistical techniques

D Demner-Fushman, J Lin - Computational Linguistics, 2007 - direct.mit.edu
The combination of recent developments in question-answering research and the
availability of unparalleled resources developed specifically for automatic semantic …

[HTML][HTML] Natural language processing to extract medical problems from electronic clinical documents: performance evaluation

S Meystre, PJ Haug - Journal of biomedical informatics, 2006 - Elsevier
In this study, we evaluate the performance of a Natural Language Processing (NLP)
application designed to extract medical problems from narrative text clinical documents. The …

Automatic extraction of semantic relations between medical entities: a rule based approach

A Ben Abacha, P Zweigenbaum - Journal of biomedical semantics, 2011 - Springer
Background Information extraction is a complex task which is necessary to develop high-
precision information retrieval tools. In this paper, we present the platform MeTAE (Medical …

Biomedical natural language processing

K Bretonnel Cohen, D Demner-Fushman - 2014 - torrossa.com
Information extraction (also known as relation extraction) is generally defined as the
extraction of information about a very focussed type of relationship from free text. Historically …

Large-scale extraction of accurate drug-disease treatment pairs from biomedical literature for drug repurposing

R Xu, QQ Wang - BMC bioinformatics, 2013 - Springer
Background A large-scale, highly accurate, machine-understandable drug-disease
treatment relationship knowledge base is important for computational approaches to drug …

Identifying medical terms in patient-authored text: a crowdsourcing-based approach

DL MacLean, J Heer - Journal of the american medical …, 2013 - academic.oup.com
Background and objective As people increasingly engage in online health-seeking behavior
and contribute to health-oriented websites, the volume of medical text authored by patients …

Automation of a problem list using natural language processing

S Meystre, PJ Haug - BMC medical informatics and decision making, 2005 - Springer
Background The medical problem list is an important part of the electronic medical record in
development in our institution. To serve the functions it is designed for, the problem list has …

Information retrieval as semantic inference: A graph inference model applied to medical search

B Koopman, G Zuccon, P Bruza, L Sitbon… - Information Retrieval …, 2016 - Springer
This paper presents a Graph Inference retrieval model that integrates structured knowledge
resources, statistical information retrieval methods and inference in a unified framework. Key …

Induced lexico-syntactic patterns improve information extraction from online medical forums

S Gupta, DL MacLean, J Heer… - Journal of the American …, 2014 - academic.oup.com
Objective To reliably extract two entity types, symptoms and conditions (SCs), and drugs and
treatments (DTs), from patient-authored text (PAT) by learning lexico-syntactic patterns from …