Reaction-rate theory: fifty years after Kramers

P Hänggi, P Talkner, M Borkovec - Reviews of modern physics, 1990 - APS
The calculation of rate coefficients is a discipline of nonlinear science of importance to much
of physics, chemistry, engineering, and biology. Fifty years after Kramers' seminal paper on …

The protein folding 'speed limit'

J Kubelka, J Hofrichter, WA Eaton - Current opinion in structural biology, 2004 - Elsevier
How fast can a protein possibly fold? This question has stimulated experimentalists to seek
fast folding proteins and to engineer them to fold even faster. Proteins folding at or near the …

Intrinsic rates and activation free energies from single-molecule pulling experiments

OK Dudko, G Hummer, A Szabo - Physical review letters, 2006 - APS
We present a unified framework for extracting kinetic information from single-molecule
pulling experiments at constant force or constant pulling speed. Our procedure provides …

Protein folding studied by single-molecule FRET

B Schuler, WA Eaton - Current opinion in structural biology, 2008 - Elsevier
A complete understanding of a protein-folding mechanism requires description of the
distribution of microscopic pathways that connect the folded and unfolded states. This …

Effect of librational motion on fluorescence depolarization and nuclear magnetic resonance relaxation in macromolecules and membranes

G Lipari, A Szabo - Biophysical journal, 1980 - cell.com
The theory of fluorescent emission anisotropy [r (t)] of a cylindrical probe in a membrane
suspension is developed. It is shown, independent of any model, that the limiting anisotropy …

[BOOK][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Single-molecule FRET spectroscopy and the polymer physics of unfolded and intrinsically disordered proteins

B Schuler, A Soranno, H Hofmann… - Annual Review of …, 2016 - annualreviews.org
The properties of unfolded proteins have long been of interest because of their importance
to the protein folding process. Recently, the surprising prevalence of unstructured regions or …

Fluorescence quenching by photoinduced electron transfer: a reporter for conformational dynamics of macromolecules

S Doose, H Neuweiler, M Sauer - ChemPhysChem, 2009 - Wiley Online Library
Structural changes on a broad range of length and time scales are closely connected to
biochemical function. The high relevance of conformational dynamics to macromolecular …

Amplification and kinetics of the activation steps in phototransduction

EN Pugh Jr, TD Lamb - Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1993 - Elsevier
Phototransduction is the process by which absorbed light is converted into an electrical
signal in retinal photoreceptors. The'cyclic GMP cascade'is now widely accepted as the …

Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome

DB Brückner, H Chen, L Barinov, B Zoller, T Gregor - Science, 2023 - science.org
Chromosomes in the eukaryotic nucleus are highly compacted. However, for many
functional processes, including transcription initiation, the pairwise motion of distal …