Reaction-rate theory: fifty years after Kramers
The calculation of rate coefficients is a discipline of nonlinear science of importance to much
of physics, chemistry, engineering, and biology. Fifty years after Kramers' seminal paper on …
of physics, chemistry, engineering, and biology. Fifty years after Kramers' seminal paper on …
Single-molecule FRET spectroscopy and the polymer physics of unfolded and intrinsically disordered proteins
The properties of unfolded proteins have long been of interest because of their importance
to the protein folding process. Recently, the surprising prevalence of unstructured regions or …
to the protein folding process. Recently, the surprising prevalence of unstructured regions or …
[LIBRO][B] Stochastic processes in cell biology
PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …
components of a living cell operate in a highly noisy environment. What are the specific …
Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome
Chromosomes in the eukaryotic nucleus are highly compacted. However, for many
functional processes, including transcription initiation, the pairwise motion of distal …
functional processes, including transcription initiation, the pairwise motion of distal …
Intrinsic rates and activation free energies from single-molecule pulling experiments
We present a unified framework for extracting kinetic information from single-molecule
pulling experiments at constant force or constant pulling speed. Our procedure provides …
pulling experiments at constant force or constant pulling speed. Our procedure provides …
The protein folding 'speed limit'
How fast can a protein possibly fold? This question has stimulated experimentalists to seek
fast folding proteins and to engineer them to fold even faster. Proteins folding at or near the …
fast folding proteins and to engineer them to fold even faster. Proteins folding at or near the …
Protein folding studied by single-molecule FRET
A complete understanding of a protein-folding mechanism requires description of the
distribution of microscopic pathways that connect the folded and unfolded states. This …
distribution of microscopic pathways that connect the folded and unfolded states. This …
Fluorescence quenching by photoinduced electron transfer: a reporter for conformational dynamics of macromolecules
Structural changes on a broad range of length and time scales are closely connected to
biochemical function. The high relevance of conformational dynamics to macromolecular …
biochemical function. The high relevance of conformational dynamics to macromolecular …
Effect of librational motion on fluorescence depolarization and nuclear magnetic resonance relaxation in macromolecules and membranes
G Lipari, A Szabo - Biophysical journal, 1980 - cell.com
The theory of fluorescent emission anisotropy [r (t)] of a cylindrical probe in a membrane
suspension is developed. It is shown, independent of any model, that the limiting anisotropy …
suspension is developed. It is shown, independent of any model, that the limiting anisotropy …
Free energy methods for the description of molecular processes
C Chipot - Annual Review of Biophysics, 2023 - annualreviews.org
Efforts to combine theory and experiment to advance our knowledge of molecular processes
relevant to biophysics have been considerably enhanced by the contribution of statistical …
relevant to biophysics have been considerably enhanced by the contribution of statistical …