Current strategies in assessment of nanotoxicity: alternatives to in vivo animal testing

HJ Huang, YH Lee, YH Hsu, CT Liao, YF Lin… - International journal of …, 2021 - mdpi.com
Millions of experimental animals are widely used in the assessment of toxicological or
biological effects of manufactured nanomaterials in medical technology. However, the …

Open-source machine learning in computational chemistry

A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …

Uncovering global-scale risks from commercial chemicals in air

Q Liu, L Li, X Zhang, A Saini, W Li, H Hung, C Hao, K Li… - Nature, 2021 - nature.com
Commercial chemicals are used extensively across urban centres worldwide, posing a
potential exposure risk to 4.2 billion people. Harmful chemicals are often assessed on the …

MolGpka: A Web Server for Small Molecule pKa Prediction Using a Graph-Convolutional Neural Network

X Pan, H Wang, C Li, JZH Zhang… - Journal of Chemical …, 2021 - ACS Publications
p K a is an important property in the lead optimization process since the charge state of a
molecule in physiologic pH plays a critical role in its biological activity, solubility, membrane …

[HTML][HTML] CyanoMetDB, a comprehensive public database of secondary metabolites from cyanobacteria

MR Jones, E Pinto, MA Torres, F Dörr, H Mazur-Marzec… - Water Research, 2021 - Elsevier
Harmful cyanobacterial blooms, which frequently contain toxic secondary metabolites, are
reported in aquatic environments around the world. More than two thousand cyanobacterial …

Holistic Prediction of the pKa in Diverse Solvents Based on a Machine‐Learning Approach

Q Yang, Y Li, JD Yang, Y Liu, L Zhang… - Angewandte …, 2020 - Wiley Online Library
While many approaches to predict aqueous pKa values exist, the fast and accurate
prediction of non‐aqueous pKa values is still challenging. Based on the iBonD experimental …

FP-ADMET: a compendium of fingerprint-based ADMET prediction models

V Venkatraman - Journal of cheminformatics, 2021 - Springer
Motivation The absorption, distribution, metabolism, excretion, and toxicity (ADMET) of drugs
plays a key role in determining which among the potential candidates are to be prioritized. In …

Potential for machine learning to address data gaps in human toxicity and ecotoxicity characterization

K von Borries, H Holmquist, M Kosnik… - Environmental …, 2023 - ACS Publications
Machine Learning (ML) is increasingly applied to fill data gaps in assessments to quantify
impacts associated with chemical emissions and chemicals in products. However, the …

Application of machine learning techniques to the analysis and prediction of drug pharmacokinetics

R Ota, F Yamashita - Journal of Controlled Release, 2022 - Elsevier
In this review, we describe the current status and challenges in applying machine-learning
techniques to the analysis and prediction of pharmacokinetic data. The theory of …

Bridging Machine Learning and Thermodynamics for Accurate pKa Prediction

W Luo, G Zhou, Z Zhu, Y Yuan, G Ke, Z Wei, Z Gao… - JACS Au, 2024 - ACS Publications
Integrating scientific principles into machine learning models to enhance their predictive
performance and generalizability is a central challenge in the development of AI for Science …