Diversity within species: interpreting strains in microbiomes

T Van Rossum, P Ferretti, OM Maistrenko… - Nature Reviews …, 2020 - nature.com
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …

Inordinate fondness multiplied and redistributed: the number of species on earth and the new pie of life

BB Larsen, EC Miller, MK Rhodes… - The Quarterly Review …, 2017 - journals.uchicago.edu
The number of species on Earth is one of the most fundamental numbers in science, but one
that remains highly uncertain. Clearly, more species exist than the present number of …

ClonalFrameML: efficient inference of recombination in whole bacterial genomes

X Didelot, DJ Wilson - PLoS computational biology, 2015 - journals.plos.org
Recombination is an important evolutionary force in bacteria, but it remains challenging to
reconstruct the imports that occurred in the ancestry of a genomic sample. Here we present …

Shedding light on the grey zone of speciation along a continuum of genomic divergence

C Roux, C Fraisse, J Romiguier, Y Anciaux… - PLoS …, 2016 - journals.plos.org
Speciation results from the progressive accumulation of mutations that decrease the
probability of mating between parental populations or reduce the fitness of hybrids—the so …

[PDF][PDF] Bypassing cultivation to identify bacterial species

LM Rodriguez-R, KT Konstantinidis - Microbe, 2014 - researchgate.net
Bypassing Cultivation To Identify Bacterial Species Page 1 Downloaded from www.asmscience.org
by IP: 191.101.6.51 On: Thu, 09 Mar 2017 16:25:59 Bypassing Cultivation To Identify Bacterial …

Population genomics of bacterial host adaptation

SK Sheppard, DS Guttman, JR Fitzgerald - Nature Reviews Genetics, 2018 - nature.com
Some bacteria can transfer to new host species, and this poses a risk to human health.
Indeed, an estimated 60% of all human pathogens have originated from other animal …

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes

S Khedkar, G Smyshlyaev, I Letunic… - Nucleic acids …, 2022 - academic.oup.com
Abstract Prokaryotic Mobile Genetic Elements (MGEs) such as transposons, integrons,
phages and plasmids, play important roles in prokaryotic evolution and in the dispersal of …

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

J Wiedenbeck, FM Cohan - FEMS microbiology reviews, 2011 - academic.oup.com
Horizontal genetic transfer (HGT) has played an important role in bacterial evolution at least
since the origins of the bacterial divisions, and HGT still facilitates the origins of bacterial …

Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains

F Lebreton, W van Schaik, A Manson McGuire… - MBio, 2013 - Am Soc Microbiol
Enterococcus faecium, natively a gut commensal organism, emerged as a leading cause of
multidrug-resistant hospital-acquired infection in the 1980s. As the living record of its …

Video ergo sum: manipulating bodily self-consciousness

B Lenggenhager, T Tadi, T Metzinger, O Blanke - Science, 2007 - science.org
Humans normally experience the conscious self as localized within their bodily borders. This
spatial unity may break down in certain neurological conditions such as out-of-body …