Directed evolution: methodologies and applications

Y Wang, P Xue, M Cao, T Yu, ST Lane… - Chemical reviews, 2021 - ACS Publications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …

Synthetic biology strategies for microbial biosynthesis of plant natural products

A Cravens, J Payne, CD Smolke - Nature communications, 2019 - nature.com
Metabolic engineers endeavor to create a bio-based manufacturing industry using microbes
to produce fuels, chemicals, and medicines. Plant natural products (PNPs) are historically …

[HTML][HTML] Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions

Y Zhao, C Coelho, AL Hughes, L Lazar-Stefanita… - Cell, 2023 - cell.com
The Sc2. 0 project is building a eukaryotic synthetic genome from scratch. A major milestone
has been achieved with all individual Sc2. 0 chromosomes assembled. Here, we describe …

Engineering is evolution: a perspective on design processes to engineer biology

SD Castle, M Stock, TE Gorochowski - Nature Communications, 2024 - nature.com
Careful consideration of how we approach design is crucial to all areas of biotechnology.
However, choosing or develo** an effective design methodology is not always easy as …

Trimming the genomic fat: minimising and re-functionalising genomes using synthetic biology

X Xu, F Meier, BA Blount, IS Pretorius, T Ellis… - Nature …, 2023 - nature.com
Naturally evolved organisms typically have large genomes that enable their survival and
growth under various conditions. However, the complexity of genomes often precludes our …

Designing a synthetic moss genome using GenoDesigner

W Yu, S Zhang, S Zhao, L Chen, J Cao, H Ye, J Yan… - Nature Plants, 2024 - nature.com
The de novo synthesis of genomes has made unprecedented progress and achieved
milestones, particularly in bacteria and yeast. However, the process of synthesizing a …

Advanced strategies for production of natural products in yeast

R Chen, S Yang, L Zhang, YJ Zhou - Iscience, 2020 - cell.com
Natural products account for more than 50% of all small-molecule pharmaceutical agents
currently in clinical use. However, low availability often becomes problematic when a …

Synthetic yeast chromosome XI design provides a testbed for the study of extrachromosomal circular DNA dynamics

BA Blount, X Lu, MRM Driessen, D Jovicevic… - Cell Genomics, 2023 - cell.com
We describe construction of the synthetic yeast chromosome XI (synXI) and reveal the
effects of redesign at non-coding DNA elements. The 660-kb synthetic yeast genome project …

Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae

L Cheng, S Zhao, T Li, S Hou, Z Luo, J Xu, W Yu… - Nature …, 2024 - nature.com
Abstract Synthetic Chromosome Rearrangement and Modification by LoxP-mediated
Evolution (SCRaMbLE) is a promising tool to study genomic rearrangements. However, the …

A robust yeast biocontainment system with two-layered regulation switch dependent on unnatural amino acid

T Chang, W Ding, S Yan, Y Wang, H Zhang… - Nature …, 2023 - nature.com
Synthetic auxotrophy in which cell viability depends on the presence of an unnatural amino
acid (unAA) provides a powerful strategy to restrict unwanted propagation of genetically …