The IEF version of the PCM solvation method: an overview of a new method addressed to study molecular solutes at the QM ab initio level

J Tomasi, B Mennucci, E Cancès - Journal of Molecular Structure …, 1999 - Elsevier
The integral equation formalism (IEF) is a recent method (the grounds have been elaborated
at the beginning of 1997) addressed to solve the electrostatic solvation problem at the QM …

Quantum Monte Carlo simulations of solids

WMC Foulkes, L Mitas, RJ Needs, G Rajagopal - Reviews of Modern Physics, 2001 - APS
This article describes the variational and fixed-node diffusion quantum Monte Carlo methods
and how they may be used to calculate the properties of many-electron systems. These …

ff14SB: improving the accuracy of protein side chain and backbone parameters from ff99SB

JA Maier, C Martinez, K Kasavajhala… - Journal of chemical …, 2015 - ACS Publications
Molecular mechanics is powerful for its speed in atomistic simulations, but an accurate force
field is required. The Amber ff99SB force field improved protein secondary structure balance …

GROMACS: fast, flexible, and free

D Van Der Spoel, E Lindahl, B Hess… - Journal of …, 2005 - Wiley Online Library
This article describes the software suite GROMACS (Groningen MAchine for Chemical
Simulation) that was developed at the University of Groningen, The Netherlands, in the early …

The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two …

Y Zhao, DG Truhlar - Theoretical chemistry accounts, 2008 - Springer
We present two new hybrid meta exchange-correlation functionals, called M06 and M06-2X.
The M06 functional is parametrized including both transition metals and nonmetals, whereas …

Development and testing of a general amber force field

J Wang, RM Wolf, JW Caldwell… - Journal of …, 2004 - Wiley Online Library
We describe here a general Amber force field (GAFF) for organic molecules. GAFF is
designed to be compatible with existing Amber force fields for proteins and nucleic acids …

Fast, efficient generation of high‐quality atomic charges. AM1‐BCC model: II. Parameterization and validation

A Jakalian, DB Jack, CI Bayly - Journal of computational …, 2002 - Wiley Online Library
We present the first global parameterization and validation of a novel charge model, called
AM1-BCC, which quickly and efficiently generates high-quality atomic charges for computer …

Natural transition orbitals

RL Martin - The Journal of chemical physics, 2003 - pubs.aip.org
The description of electronically excited states is often couched in terms of excitation
amplitudes based on a set of ground state orbitals. For example, in the configuration …

Revisiting fluorescent calixarenes: from molecular sensors to smart materials

R Kumar, A Sharma, H Singh, P Suating… - Chemical …, 2019 - ACS Publications
Calix [n] arenes (n= 4, 5, 6, 8) are “chalicelike” phenol-based macrocycles that are among
the most fascinating and highly studied scaffolds in supramolecular chemistry. This stems …

A new definition of cavities for the computation of solvation free energies by the polarizable continuum model

V Barone, M Cossi, J Tomasi - The Journal of chemical physics, 1997 - pubs.aip.org
In the half past century the development of powerful quantum mechanical methods for the
study of chemical processes involving isolated molecules has known an impressive …