The IEF version of the PCM solvation method: an overview of a new method addressed to study molecular solutes at the QM ab initio level
The integral equation formalism (IEF) is a recent method (the grounds have been elaborated
at the beginning of 1997) addressed to solve the electrostatic solvation problem at the QM …
at the beginning of 1997) addressed to solve the electrostatic solvation problem at the QM …
Quantum Monte Carlo simulations of solids
This article describes the variational and fixed-node diffusion quantum Monte Carlo methods
and how they may be used to calculate the properties of many-electron systems. These …
and how they may be used to calculate the properties of many-electron systems. These …
ff14SB: improving the accuracy of protein side chain and backbone parameters from ff99SB
JA Maier, C Martinez, K Kasavajhala… - Journal of chemical …, 2015 - ACS Publications
Molecular mechanics is powerful for its speed in atomistic simulations, but an accurate force
field is required. The Amber ff99SB force field improved protein secondary structure balance …
field is required. The Amber ff99SB force field improved protein secondary structure balance …
GROMACS: fast, flexible, and free
This article describes the software suite GROMACS (Groningen MAchine for Chemical
Simulation) that was developed at the University of Groningen, The Netherlands, in the early …
Simulation) that was developed at the University of Groningen, The Netherlands, in the early …
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two …
We present two new hybrid meta exchange-correlation functionals, called M06 and M06-2X.
The M06 functional is parametrized including both transition metals and nonmetals, whereas …
The M06 functional is parametrized including both transition metals and nonmetals, whereas …
Development and testing of a general amber force field
J Wang, RM Wolf, JW Caldwell… - Journal of …, 2004 - Wiley Online Library
We describe here a general Amber force field (GAFF) for organic molecules. GAFF is
designed to be compatible with existing Amber force fields for proteins and nucleic acids …
designed to be compatible with existing Amber force fields for proteins and nucleic acids …
Fast, efficient generation of high‐quality atomic charges. AM1‐BCC model: II. Parameterization and validation
A Jakalian, DB Jack, CI Bayly - Journal of computational …, 2002 - Wiley Online Library
We present the first global parameterization and validation of a novel charge model, called
AM1-BCC, which quickly and efficiently generates high-quality atomic charges for computer …
AM1-BCC, which quickly and efficiently generates high-quality atomic charges for computer …
Natural transition orbitals
RL Martin - The Journal of chemical physics, 2003 - pubs.aip.org
The description of electronically excited states is often couched in terms of excitation
amplitudes based on a set of ground state orbitals. For example, in the configuration …
amplitudes based on a set of ground state orbitals. For example, in the configuration …
Revisiting fluorescent calixarenes: from molecular sensors to smart materials
Calix [n] arenes (n= 4, 5, 6, 8) are “chalicelike” phenol-based macrocycles that are among
the most fascinating and highly studied scaffolds in supramolecular chemistry. This stems …
the most fascinating and highly studied scaffolds in supramolecular chemistry. This stems …
A new definition of cavities for the computation of solvation free energies by the polarizable continuum model
In the half past century the development of powerful quantum mechanical methods for the
study of chemical processes involving isolated molecules has known an impressive …
study of chemical processes involving isolated molecules has known an impressive …