[HTML][HTML] Conserved pan-cancer microenvironment subtypes predict response to immunotherapy

A Bagaev, N Kotlov, K Nomie, V Svekolkin, A Gafurov… - Cancer cell, 2021 - cell.com
The clinical use of molecular targeted therapy is rapidly evolving but has primarily focused
on genomic alterations. Transcriptomic analysis offers an opportunity to dissect the …

Cancer Biomarkers in the era of precision oncology: Addressing the needs of patients and health systems

N Normanno, K Apostolidis, F de Lorenzo… - Seminars in cancer …, 2022 - Elsevier
Cancer Biomarkers are the key to unlocking the promise of precision oncology, selecting
which patients will respond to a more personalised treatment while sparing non-responders …

Use of circulating tumour DNA (ctDNA) for measurement of therapy predictive biomarkers in patients with cancer

MJ Duffy, J Crown - Journal of Personalized Medicine, 2022 - mdpi.com
Biomarkers that predict likely response or resistance to specific therapies are critical in
personalising treatment for cancer patients. Such biomarkers are now available for an …

Extracellular matrix in synthetic hydrogel‐based prostate cancer organoids regulate therapeutic response to EZH2 and DRD2 inhibitors

MJ Mosquera, S Kim, R Bareja, Z Fang… - Advanced …, 2022 - Wiley Online Library
Following treatment with androgen receptor (AR) pathway inhibitors,≈ 20% of prostate
cancer patients progress by shedding their AR‐dependence. These tumors undergo …

SLFN11 expression in advanced prostate cancer and response to platinum-based chemotherapy

V Conteduca, SY Ku, L Puca, M Slade… - Molecular cancer …, 2020 - AACR
Expression of the DNA/RNA helicase schlafen family member 11 (SLFN11) has been
identified as a sensitizer of tumor cells to DNA-damaging agents including platinum …

Serial ctDNA analysis predicts clinical progression in patients with advanced urothelial carcinoma

KS Shohdy, DM Villamar, Y Cao, J Trieu… - British Journal of …, 2022 - nature.com
Background Targeted sequencing of circulating tumour DNA (ctDNA) is a promising tool to
monitor dynamic changes in the variant allele frequencies (VAF) of genomic alterations and …

Evolution of structural rearrangements in prostate cancer intracranial metastases

F Khani, WF Hooper, X Wang, TR Chu, M Shah… - NPJ Precision …, 2023 - nature.com
Intracranial metastases in prostate cancer are uncommon but clinically aggressive. A
detailed molecular characterization of prostate cancer intracranial metastases would …

Integrated genomic analyses of hepatocellular carcinoma

YS Chang, SJ Tu, HD Chen, MH Hsu, YC Chen… - Hepatology …, 2023 - Springer
Background Genomic alterations play important roles in the development of cancer. We
explored the impact of protein-coding genes and transcriptomic changes on clinical and …

Differential impact of tumor suppressor gene (TP53, PTEN, RB1) alterations and treatment outcomes in metastatic, hormone-sensitive prostate cancer

MG Velez, HE Kosiorek, JB Egan, AL McNatty… - Prostate Cancer and …, 2022 - nature.com
Background Altered tumor suppressor genes (TSG-alt) in prostate cancer are associated
with worse outcomes. The prognostic value of TSG-alt in metastatic, hormone-sensitive …

Common germline-somatic variant interactions in advanced urothelial cancer

A Vosoughi, T Zhang, KS Shohdy… - Nature …, 2020 - nature.com
The prevalence and biological consequences of deleterious germline variants in urothelial
cancer (UC) are not fully characterized. We performed whole-exome sequencing (WES) of …