Comprehensive evaluation of map** complex traits in wheat using genome-wide association studies

DK Saini, Y Chopra, J Singh, KS Sandhu, A Kumar… - Molecular …, 2022 - Springer
Genome-wide association studies (GWAS) are effectively applied to detect the marker trait
associations (MTAs) using whole genome-wide variants for complex quantitative traits in …

An overview of STRUCTURE: applications, parameter settings, and supporting software

L Porras-Hurtado, Y Ruiz, C Santos, C Phillips… - Frontiers in …, 2013 - frontiersin.org
Objectives: We present an up-to-date review of STRUCTURE software: one of the most
widely used population analysis tools that allows researchers to assess patterns of genetic …

GAPIT version 3: boosting power and accuracy for genomic association and prediction

J Wang, Z Zhang - Genomics, Proteomics and Bioinformatics, 2021 - academic.oup.com
Genome-wide association study (GWAS) and genomic prediction/selection (GP/GS) are the
two essential enterprises in genomic research. Due to the great magnitude and complexity …

[PDF][PDF] Salinity stress in wheat: effects, mechanisms and management strategies.

MF Seleiman, MT Aslam, BA Alhammad… - Phyton (0031 …, 2022 - researchgate.net
Salinity stress is a major threat to global food production and its intensity is continuously
increasing because of anthropogenic activities. Wheat is a staple food and a source of …

BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions

M Huang, X Liu, Y Zhou, RM Summers, Z Zhang - Gigascience, 2019 - academic.oup.com
Big datasets, accumulated from biomedical and agronomic studies, provide the potential to
identify genes that control complex human diseases and agriculturally important traits …

False discovery rates: a new deal

M Stephens - Biostatistics, 2017 - academic.oup.com
We introduce a new Empirical Bayes approach for large-scale hypothesis testing, including
estimating false discovery rates (FDRs), and effect sizes. This approach has two key …

The blessings of multiple causes

Y Wang, DM Blei - Journal of the American Statistical Association, 2019 - Taylor & Francis
Causal inference from observational data is a vital problem, but it comes with strong
assumptions. Most methods assume that we observe all confounders, variables that affect …

A model of text for experimentation in the social sciences

ME Roberts, BM Stewart, EM Airoldi - Journal of the American …, 2016 - Taylor & Francis
Statistical models of text have become increasingly popular in statistics and computer
science as a method of exploring large document collections. Social scientists often want to …

GAPIT: genome association and prediction integrated tool

AE Lipka, F Tian, Q Wang, J Peiffer, M Li… - …, 2012 - academic.oup.com
Software programs that conduct genome-wide association studies and genomic prediction
and selection need to use methodologies that maximize statistical power, provide high …

Fast and efficient estimation of individual ancestry coefficients

E Frichot, F Mathieu, T Trouillon, G Bouchard… - Genetics, 2014 - academic.oup.com
Inference of individual ancestry coefficients, which is important for population genetic and
association studies, is commonly performed using computer-intensive likelihood algorithms …