[HTML][HTML] Biomedical text mining and its applications in cancer research

F Zhu, P Patumcharoenpol, C Zhang, Y Yang… - Journal of biomedical …, 2013 - Elsevier
Cancer is a malignant disease that has caused millions of human deaths. Its study has a
long history of well over 100years. There have been an enormous number of publications on …

An overview of BioCreative II. 5

F Leitner, SA Mardis, M Krallinger… - IEEE/ACM …, 2010 - ieeexplore.ieee.org
We present the results of the BioCreative II. 5 evaluation in association with the FEBS Letters
experiment, where authors created Structured Digital Abstracts to capture information about …

The CHEMDNER corpus of chemicals and drugs and its annotation principles

M Krallinger, O Rabal, F Leitner, M Vazquez… - Journal of …, 2015 - Springer
The automatic extraction of chemical information from text requires the recognition of
chemical entity mentions as one of its key steps. When develo** supervised named entity …

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions

WW Chapman, PM Nadkarni… - Journal of the …, 2011 - academic.oup.com
This issue of JAMIA focuses on natural language processing (NLP) techniques for clinical-
text information extraction. Several articles are offshoots of the yearly 'Informatics for …

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

A Özgür, T Vu, G Erkan, DR Radev - Bioinformatics, 2008 - academic.oup.com
Motivation: Understanding the role of genetics in diseases is one of the most important aims
of the biological sciences. The completion of the Human Genome Project has led to a rapid …

Overview of the protein-protein interaction annotation extraction task of BioCreative II

M Krallinger, F Leitner, C Rodriguez-Penagos… - Genome biology, 2008 - Springer
Background: The biomedical literature is the primary information source for manual protein-
protein interaction annotations. Text-mining systems have been implemented to extract …

[HTML][HTML] BioC: a minimalist approach to interoperability for biomedical text processing

DC Comeau, R Islamaj Doğan, P Ciccarese… - Database, 2013 - academic.oup.com
A vast amount of scientific information is encoded in natural language text, and the quantity
of such text has become so great that it is no longer economically feasible to have a human …

[PDF][PDF] Overview of SympTEMIST at BioCreative VIII: corpus, guidelines and evaluation of systems for the detection and normalization of symptoms, signs and findings …

S Lima-López, E Farré-Maduell… - Proceedings of the …, 2023 - researchgate.net
Abstract Systems able to detect and normalize symptom mentions from clinical texts are
crucial for healthcare data mining, AI applied to clinical systems, medical analytics and …

Biomedical text mining and its applications

R Rodriguez-Esteban - PLoS computational biology, 2009 - journals.plos.org
This tutorial is intended for biologists and computational biologists interested in adding text
mining tools to their bioinformatics toolbox. As an illustrative example, the tutorial examines …